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1W4N
Asym. Unit
Info
Asym.Unit (398 KB)
Biol.Unit 1 (388 KB)
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(1)
Title
:
AGAO COVALENT COMPLEX WITH TRANYLCYPROMINE
Authors
:
A. P. Duff, D. M. Trambaiolo, D. B. Langley, G. A. Juda, E. M. Shepard, D. M H. C. Freeman, J. M. Guss
Date
:
27 Jul 04 (Deposition) - 08 Dec 05 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper Containing, Metal-Binding, Oxidoreductase, Tcq, Quinone, Inhibited, Tcp, Tranylcypromine
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. B. Langley, D. M. Trambaiolo, A. P. Duff, D. M. Dooley, H. C. Freeman, J. M. Guss
Complexes Of The Copper-Containing Amine Oxidase From Arthrobacter Globiformis With The Inhibitors Benzylhydrazine And Tranylcypromine.
Acta Crystallogr. , Sect. F V. 64 577 2008
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
5a: (1S,2R)-N-{(1E)-5-[(2S)-2-AMINO-2-... (TCQa)
5b: (1S,2R)-N-{(1E)-5-[(2S)-2-AMINO-2-... (TCQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
GOL
9
Ligand/Ion
GLYCEROL
3
NA
2
Ligand/Ion
SODIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
5
TCQ
2
Mod. Amino Acid
(1S,2R)-N-{(1E)-5-[(2S)-2-AMINO-2-CARBOXYETHYL]-2-HYDROXY-4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE}-2-PHENYLCYCLOPROPANAMINIUM
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2332 , HOH A:2334
BINDING SITE FOR RESIDUE CU A 701
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2337
BINDING SITE FOR RESIDUE NA A 703
03
AC3
SOFTWARE
GLY A:350 , ARG A:367 , HOH A:2490 , HOH A:2491 , HOH A:2492 , ASP B:316 , CYS B:317 , LEU B:318 , HIS B:345 , HOH B:2297 , HOH B:2329
BINDING SITE FOR RESIDUE SO4 A 711
04
AC4
SOFTWARE
HIS B:431 , HIS B:433 , HIS B:592 , HOH B:2327 , HOH B:2358
BINDING SITE FOR RESIDUE CU B 701
05
AC5
SOFTWARE
ASP B:440 , MET B:441 , ASP B:581 , ILE B:582 , HOH B:2363
BINDING SITE FOR RESIDUE NA B 703
06
AC6
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , HIS A:345 , HOH A:2272 , HOH A:2303 , GLY B:350 , ARG B:367 , HOH B:2534 , HOH B:2535 , HOH B:2536
BINDING SITE FOR RESIDUE SO4 B 711
07
AC7
SOFTWARE
ASP A:161 , HIS A:170 , VAL A:197 , ALA A:199 , HOH A:2493
BINDING SITE FOR RESIDUE GOL A 751
08
AC8
SOFTWARE
LEU A:590 , ASP A:605 , THR A:606 , HIS B:515 , ARG B:612
BINDING SITE FOR RESIDUE GOL A 752
09
AC9
SOFTWARE
SER A:620 , PRO A:621 , VAL A:622 , LEU A:623 , ASP A:624 , HOH A:2227 , HOH A:2495 , HOH A:2496 , LEU B:209
BINDING SITE FOR RESIDUE GOL A 753
10
BC1
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A 755
11
BC2
SOFTWARE
ASN B:126 , ASP B:161 , HIS B:170 , VAL B:197 , PRO B:198 , ALA B:199 , HOH B:2537 , HOH B:2538
BINDING SITE FOR RESIDUE GOL B 751
12
BC3
SOFTWARE
HIS A:515 , ARG A:612 , HOH A:2480 , LEU B:590 , ASP B:605 , THR B:606
BINDING SITE FOR RESIDUE GOL B 752
13
BC4
SOFTWARE
LEU A:209 , THR A:210 , SER B:620 , PRO B:621 , VAL B:622 , LEU B:623 , ASP B:624
BINDING SITE FOR RESIDUE GOL B 753
14
BC5
SOFTWARE
ARG B:532 , ARG B:533 , THR B:554 , PHE B:557 , HIS B:561 , SER B:562 , GLY B:563 , GLY B:564 , ALA B:565 , HOH B:2468
BINDING SITE FOR RESIDUE GOL B 754
15
BC6
SOFTWARE
ASP B:444 , GLY B:445 , PHE B:446 , THR B:447 , ASN B:499
BINDING SITE FOR RESIDUE GOL B 755
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384,B:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600,B:587-600)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
B:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
B:587-600
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1w4na1 (A:212-627)
1b: SCOP_d1w4nb1 (B:212-627)
2a: SCOP_d1w4na2 (A:9-96)
2b: SCOP_d1w4na3 (A:97-211)
2c: SCOP_d1w4nb2 (B:9-96)
2d: SCOP_d1w4nb3 (B:97-211)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d1w4na1
A:212-627
1b
d1w4nb1
B:212-627
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d1w4na2
A:9-96
2b
d1w4na3
A:97-211
2c
d1w4nb2
B:9-96
2d
d1w4nb3
B:97-211
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1w4nA02 (A:102-203)
1b: CATH_1w4nB02 (B:102-203)
1c: CATH_1w4nA01 (A:9-95)
1d: CATH_1w4nB01 (B:9-95)
2a: CATH_1w4nA03 (A:204-627)
2b: CATH_1w4nB03 (B:204-627)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
1w4nA02
A:102-203
1b
1w4nB02
B:102-203
1c
1w4nA01
A:9-95
1d
1w4nB01
B:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
1w4nA03
A:204-627
2b
1w4nB03
B:204-627
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_1w4nB01 (B:98-198)
1b: PFAM_Cu_amine_oxidN3_1w4nB02 (B:98-198)
2a: PFAM_Cu_amine_oxid_1w4nB03 (B:219-627)
2b: PFAM_Cu_amine_oxid_1w4nB04 (B:219-627)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-1w4nB01
B:98-198
1b
Cu_amine_oxidN3-1w4nB02
B:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-1w4nB03
B:219-627
2b
Cu_amine_oxid-1w4nB04
B:219-627
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