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1W36
Biol. Unit 1
Info
Asym.Unit (944 KB)
Biol.Unit 1 (474 KB)
Biol.Unit 2 (467 KB)
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(1)
Title
:
RECBCD:DNA COMPLEX
Authors
:
M. R. Singleton, M. S. Dillingham, M. Gaudier, S. C Kowalczykowski, D. B. Wigley
Date
:
13 Jul 04 (Deposition) - 04 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : B,C,D,E,F,G,Y,Z
Biol. Unit 1: B,C,D,Y (1x)
Biol. Unit 2: E,F,G,Z (1x)
Keywords
:
Recombination, Helicase, Nuclease, Hydrolase, Dna Repair
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. R. Singleton, M. S. Dillingham, M. Gaudier, S. C. Kowalczykowski, D. B. Wigley
Crystal Structure Of Recbcd Enzyme Reveals A Machine For Processing Dna Breaks
Nature V. 432 187 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:956 , ASP B:1067 , ASP B:1080 , TYR B:1081
BINDING SITE FOR RESIDUE CA B4000
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UVRD_HELICASE_ATP_BIND (B:2-450)
2: UVRD_HELICASE_CTER (B:480-746)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UVRD_HELICASE_ATP_BIND
PS51198
UvrD-like DNA helicase ATP-binding domain profile.
RECB_ECOLI
2-450
1
B:2-450
-
2
UVRD_HELICASE_CTER
PS51217
UvrD-like DNA helicase C-terminal domain profile.
RECB_ECOLI
480-746
1
B:480-746
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 16)
Info
All SCOP Domains
1a: SCOP_d1w36d1 (D:2-360)
1b: SCOP_d1w36d2 (D:361-606)
1c: SCOP_d1w36g1 (G:2-360)
1d: SCOP_d1w36g2 (G:361-606)
2a: SCOP_d1w36b1 (B:1-485)
2b: SCOP_d1w36b2 (B:486-880)
2c: SCOP_d1w36e1 (E:1-485)
2d: SCOP_d1w36e2 (E:486-880)
3a: SCOP_d1w36c1 (C:1-347)
3b: SCOP_d1w36c2 (C:348-817)
3c: SCOP_d1w36f1 (F:1-347)
3d: SCOP_d1w36f2 (F:348-817)
4a: SCOP_d1w36b3 (B:899-1174)
4b: SCOP_d1w36e3 (E:899-1174)
5a: SCOP_d1w36c3 (C:818-1121)
5b: SCOP_d1w36f3 (F:818-1121)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
Exodeoxyribonuclease V alpha chain (RecD)
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1w36d1
D:2-360
1b
d1w36d2
D:361-606
1c
d1w36g1
G:2-360
1d
d1w36g2
G:361-606
Protein domain
:
Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1w36b1
B:1-485
2b
d1w36b2
B:486-880
2c
d1w36e1
E:1-485
2d
d1w36e2
E:486-880
Protein domain
:
Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1w36c1
C:1-347
3b
d1w36c2
C:348-817
3c
d1w36f1
F:1-347
3d
d1w36f2
F:348-817
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
Restriction endonuclease-like
(170)
Family
:
Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
(1)
Protein domain
:
Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
4a
d1w36b3
B:899-1174
4b
d1w36e3
E:899-1174
Family
:
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
(1)
Protein domain
:
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
5a
d1w36c3
C:818-1121
5b
d1w36f3
F:818-1121
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CATH Domains
(4, 14)
Info
all CATH domains
1a: CATH_1w36D02 (D:111-355)
1b: CATH_1w36G02 (G:111-355)
1c: CATH_1w36D03 (D:365-593)
1d: CATH_1w36G03 (G:365-593)
1e: CATH_1w36B01 (B:1-154,B:350-443)
1f: CATH_1w36E01 (E:1-154,E:350-443)
1g: CATH_1w36B03 (B:444-582,B:729-888)
1h: CATH_1w36E03 (E:444-582,E:729-888)
2a: CATH_1w36B05 (B:889-1174)
2b: CATH_1w36E05 (E:889-1174)
3a: CATH_1w36B04 (B:583-728)
3b: CATH_1w36E04 (E:583-728)
4a: CATH_1w36B02 (B:155-349)
4b: CATH_1w36E02 (E:155-349)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562.
(35)
1a
1w36D02
D:111-355
1b
1w36G02
G:111-355
1c
1w36D03
D:365-593
1d
1w36G03
G:365-593
1e
1w36B01
B:1-154,B:350-443
1f
1w36E01
E:1-154,E:350-443
1g
1w36B03
B:444-582,B:729-888
1h
1w36E03
E:444-582,E:729-888
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Lambda Exonuclease; Chain A
(10)
Homologous Superfamily
:
[code=3.90.320.10, no name defined]
(3)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1w36B05
B:889-1174
2b
1w36E05
E:889-1174
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
PCRA; domain 4
(12)
Homologous Superfamily
:
PCRA; domain 4
(12)
Escherichia coli. Organism_taxid: 562.
(1)
3a
1w36B04
B:583-728
3b
1w36E04
E:583-728
Topology
:
Recbcd, chain B, domain 2
(2)
Homologous Superfamily
:
Recbcd, chain B, domain 2
(2)
Escherichia coli. Organism_taxid: 562.
(1)
4a
1w36B02
B:155-349
4b
1w36E02
E:155-349
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (944 KB)
Header - Asym.Unit
Biol.Unit 1 (474 KB)
Header - Biol.Unit 1
Biol.Unit 2 (467 KB)
Header - Biol.Unit 2
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