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1VZH
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
STRUCTURE OF SUPEROXIDE REDUCTASE BOUND TO FERROCYANIDE AND ACTIVE SITE EXPANSION UPON X-RAY INDUCED PHOTOREDUCTION
Authors
:
V. Adam, A. Royant, V. Niviere, F. P. Molina-Heredia, D. Bourgeois
Date
:
19 May 04 (Deposition) - 27 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ferrocyanide, Microspectrophotometry, Redox States, Photoreduction, Dinuclear Iron Cluster, Oxidoreductase, Electron Transport
(Keyword Search:
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Reference
:
V. Adam, A. Royant, V. Niviere, F. P. Molina-Heredia, D. Bourgeois
Structure Of Superoxide Reductase Bound To Ferrocyanide And Active Site Expansion Upon X-Ray Induced Photoreduction
Structure V. 12 1729 2004
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: HEXACYANOFERRATE(3-) (FC6a)
2b: HEXACYANOFERRATE(3-) (FC6b)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
3c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
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No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
FC6
2
Ligand/Ion
HEXACYANOFERRATE(3-)
3
FE
4
Ligand/Ion
FE (III) ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:10 , CYS A:13 , ASN A:15 , CYS A:29 , CYS A:30 , GLY B:25
BINDING SITE FOR RESIDUE FE A1127
2
AC2
SOFTWARE
CYS A:88 , THR A:90 , HOH A:2019 , CYS B:88 , THR B:90 , HOH B:2013
BINDING SITE FOR RESIDUE CA A1128
3
AC3
SOFTWARE
HIS A:49 , HIS A:69 , HIS A:75 , CYS A:116 , HIS A:119 , FC6 A:1130
BINDING SITE FOR RESIDUE FE A1129
4
AC4
SOFTWARE
GLY A:25 , CYS B:10 , CYS B:13 , CYS B:29 , CYS B:30
BINDING SITE FOR RESIDUE FE B1127
5
AC5
SOFTWARE
HIS B:49 , HIS B:69 , HIS B:75 , CYS B:116 , HIS B:119 , FC6 B:1129
BINDING SITE FOR RESIDUE FE B1128
6
AC6
SOFTWARE
ALA A:45 , LYS A:48 , HIS A:49 , HIS A:69 , HIS A:75 , HIS A:119 , FE A:1129 , HOH A:2083
BINDING SITE FOR RESIDUE FC6 A1130
7
AC7
SOFTWARE
ALA B:45 , LYS B:48 , HIS B:49 , HIS B:69 , HIS B:75 , HIS B:119 , FE B:1128 , HOH B:2078
BINDING SITE FOR RESIDUE FC6 B1129
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1vzha1 (A:38-126)
1b: SCOP_d1vzhb1 (B:38-126)
2a: SCOP_d1vzha2 (A:2-37)
2b: SCOP_d1vzhb2 (B:2-37)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Superoxide reductase-like
(17)
Family
:
Superoxide reductase-like
(13)
Protein domain
:
Desulfoferrodoxin C-terminal domain
(4)
Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]
(3)
1a
d1vzha1
A:38-126
1b
d1vzhb1
B:38-126
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Desulforedoxin
(10)
Protein domain
:
Desulfoferrodoxin N-terminal domain
(4)
Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]
(3)
2a
d1vzha2
A:2-37
2b
d1vzhb2
B:2-37
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CATH Domains
(0, 0)
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Desulfoferrod_N_1vzhB01 (B:2-37)
1b: PFAM_Desulfoferrod_N_1vzhB02 (B:2-37)
2a: PFAM_Desulfoferrodox_1vzhB03 (B:41-125)
2b: PFAM_Desulfoferrodox_1vzhB04 (B:41-125)
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Clan
:
Rubredoxin
(46)
Family
:
Desulfoferrod_N
(6)
Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14)
(6)
1a
Desulfoferrod_N-1vzhB01
B:2-37
1b
Desulfoferrod_N-1vzhB02
B:2-37
Clan
:
SOR
(12)
Family
:
Desulfoferrodox
(8)
Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14)
(6)
2a
Desulfoferrodox-1vzhB03
B:41-125
2b
Desulfoferrodox-1vzhB04
B:41-125
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Asymmetric Unit 1
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