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1VYH
Biol. Unit 3
Info
Asym.Unit (812 KB)
Biol.Unit 1 (171 KB)
Biol.Unit 2 (172 KB)
Biol.Unit 3 (171 KB)
Biol.Unit 4 (171 KB)
Biol.Unit 5 (171 KB)
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(1)
Title
:
PAF-AH HOLOENZYME: LIS1/ALFA2
Authors
:
C. Tarricone, F. Perrina, S. Monzani, L. Massimiliano, S. Knapp, L. -H. Tsai, Z. S. Derewenda, A. Musacchio
Date
:
30 Apr 04 (Deposition) - 26 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Biol. Unit 5: Q,R,S,T (1x)
Keywords
:
Lissencephaly, Acetylhydrolase, Platelet Activacting Factor, Regulator Of Cytoplasmic Dynein, Hydrolase, Cell Division, Mitosis, Neurogenesis, Cytoskeleton
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Tarricone, F. Perrina, S. Monzani, L. Massimiliano, M. H. Kim, Z. S. Derewenda, S. Knapp, L. -H. Tsai, A. Musacchio
Coupling Paf Signaling To Dynein Regulation: Structure Of Lis1 In Complex With Paf- Acetylhydrolase.
Neuron V. 44 809 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (K:165-179,L:165-179,K:207-221,L:20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
LIS1_MOUSE
165-179
207-221
311-325
395-409
8
-
-
-
-
K:165-179
L:165-179
-
-
-
-
-
-
-
-
K:207-221
L:207-221
-
-
-
-
-
-
-
-
K:311-325
L:311-325
-
-
-
-
-
-
-
-
K:395-408
L:395-408
-
-
-
-
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Exons
(0, 0)
Info
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 20)
Info
All SCOP Domains
1a: SCOP_d1vyhc1 (C:92-408)
1b: SCOP_d1vyhd1 (D:92-408)
1c: SCOP_d1vyhg1 (G:92-408)
1d: SCOP_d1vyhh1 (H:92-408)
1e: SCOP_d1vyhk1 (K:92-408)
1f: SCOP_d1vyhl1 (L:92-408)
1g: SCOP_d1vyho1 (O:92-408)
1h: SCOP_d1vyhp1 (P:92-408)
1i: SCOP_d1vyhs1 (S:92-408)
1j: SCOP_d1vyht1 (T:92-408)
2a: SCOP_d1vyha1 (A:6-217)
2b: SCOP_d1vyhr1 (R:6-217)
2c: SCOP_d1vyhb1 (B:6-217)
2d: SCOP_d1vyhe1 (E:6-217)
2e: SCOP_d1vyhf1 (F:6-217)
2f: SCOP_d1vyhi1 (I:6-217)
2g: SCOP_d1vyhj1 (J:6-217)
2h: SCOP_d1vyhm1 (M:6-217)
2i: SCOP_d1vyhn1 (N:6-217)
2j: SCOP_d1vyhq1 (Q:6-217)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
Platelet-activating factor acetylhydrolase IB subunit alpha
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1vyhc1
C:92-408
1b
d1vyhd1
D:92-408
1c
d1vyhg1
G:92-408
1d
d1vyhh1
H:92-408
1e
d1vyhk1
K:92-408
1f
d1vyhl1
L:92-408
1g
d1vyho1
O:92-408
1h
d1vyhp1
P:92-408
1i
d1vyhs1
S:92-408
1j
d1vyht1
T:92-408
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
SGNH hydrolase
(48)
Family
:
Acetylhydrolase
(12)
Protein domain
:
Platelet-activating factor acetylhydrolase
(8)
Cow (Bos taurus), alpha2 [TaxId: 9913]
(2)
2a
d1vyha1
A:6-217
2b
d1vyhr1
R:6-217
2c
d1vyhb1
B:6-217
2d
d1vyhe1
E:6-217
2e
d1vyhf1
F:6-217
2f
d1vyhi1
I:6-217
2g
d1vyhj1
J:6-217
2h
d1vyhm1
M:6-217
2i
d1vyhn1
N:6-217
2j
d1vyhq1
Q:6-217
[
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]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1vyhA00 (A:6-223)
1b: CATH_1vyhB00 (B:6-223)
1c: CATH_1vyhE00 (E:6-223)
1d: CATH_1vyhF00 (F:6-223)
1e: CATH_1vyhI00 (I:6-223)
1f: CATH_1vyhJ00 (J:6-223)
1g: CATH_1vyhM00 (M:6-223)
1h: CATH_1vyhN00 (N:6-223)
1i: CATH_1vyhQ00 (Q:6-223)
1j: CATH_1vyhR00 (R:6-223)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1110, no name defined]
(34)
Mouse (Mus musculus)
(1)
1a
1vyhA00
A:6-223
1b
1vyhB00
B:6-223
1c
1vyhE00
E:6-223
1d
1vyhF00
F:6-223
1e
1vyhI00
I:6-223
1f
1vyhJ00
J:6-223
1g
1vyhM00
M:6-223
1h
1vyhN00
N:6-223
1i
1vyhQ00
Q:6-223
1j
1vyhR00
R:6-223
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close CATH info
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Pfam Domains
(2, 80)
Info
all PFAM domains
1a: PFAM_WD40_1vyhT01 (T:370-408)
1b: PFAM_WD40_1vyhT02 (T:370-408)
1c: PFAM_WD40_1vyhT03 (T:370-408)
1d: PFAM_WD40_1vyhT04 (T:370-408)
1e: PFAM_WD40_1vyhT05 (T:370-408)
1f: PFAM_WD40_1vyhT06 (T:370-408)
1g: PFAM_WD40_1vyhT07 (T:370-408)
1h: PFAM_WD40_1vyhT08 (T:370-408)
1i: PFAM_WD40_1vyhT09 (T:370-408)
1j: PFAM_WD40_1vyhT10 (T:370-408)
1k: PFAM_WD40_1vyhT11 (T:370-408)
1l: PFAM_WD40_1vyhT12 (T:370-408)
1m: PFAM_WD40_1vyhT13 (T:370-408)
1n: PFAM_WD40_1vyhT14 (T:370-408)
1o: PFAM_WD40_1vyhT15 (T:370-408)
1p: PFAM_WD40_1vyhT16 (T:370-408)
1q: PFAM_WD40_1vyhT17 (T:370-408)
1r: PFAM_WD40_1vyhT18 (T:370-408)
1s: PFAM_WD40_1vyhT19 (T:370-408)
1t: PFAM_WD40_1vyhT20 (T:370-408)
1u: PFAM_WD40_1vyhT21 (T:370-408)
1v: PFAM_WD40_1vyhT22 (T:370-408)
1w: PFAM_WD40_1vyhT23 (T:370-408)
1x: PFAM_WD40_1vyhT24 (T:370-408)
1y: PFAM_WD40_1vyhT25 (T:370-408)
1z: PFAM_WD40_1vyhT26 (T:370-408)
1aa: PFAM_WD40_1vyhT27 (T:370-408)
1ab: PFAM_WD40_1vyhT28 (T:370-408)
1ac: PFAM_WD40_1vyhT29 (T:370-408)
1ad: PFAM_WD40_1vyhT30 (T:370-408)
1ae: PFAM_WD40_1vyhT31 (T:370-408)
1af: PFAM_WD40_1vyhT32 (T:370-408)
1ag: PFAM_WD40_1vyhT33 (T:370-408)
1ah: PFAM_WD40_1vyhT34 (T:370-408)
1ai: PFAM_WD40_1vyhT35 (T:370-408)
1aj: PFAM_WD40_1vyhT36 (T:370-408)
1ak: PFAM_WD40_1vyhT37 (T:370-408)
1al: PFAM_WD40_1vyhT38 (T:370-408)
1am: PFAM_WD40_1vyhT39 (T:370-408)
1an: PFAM_WD40_1vyhT40 (T:370-408)
1ao: PFAM_WD40_1vyhT41 (T:370-408)
1ap: PFAM_WD40_1vyhT42 (T:370-408)
1aq: PFAM_WD40_1vyhT43 (T:370-408)
1ar: PFAM_WD40_1vyhT44 (T:370-408)
1as: PFAM_WD40_1vyhT45 (T:370-408)
1at: PFAM_WD40_1vyhT46 (T:370-408)
1au: PFAM_WD40_1vyhT47 (T:370-408)
1av: PFAM_WD40_1vyhT48 (T:370-408)
1aw: PFAM_WD40_1vyhT49 (T:370-408)
1ax: PFAM_WD40_1vyhT50 (T:370-408)
1ay: PFAM_WD40_1vyhT51 (T:370-408)
1az: PFAM_WD40_1vyhT52 (T:370-408)
1ba: PFAM_WD40_1vyhT53 (T:370-408)
1bb: PFAM_WD40_1vyhT54 (T:370-408)
1bc: PFAM_WD40_1vyhT55 (T:370-408)
1bd: PFAM_WD40_1vyhT56 (T:370-408)
1be: PFAM_WD40_1vyhT57 (T:370-408)
1bf: PFAM_WD40_1vyhT58 (T:370-408)
1bg: PFAM_WD40_1vyhT59 (T:370-408)
1bh: PFAM_WD40_1vyhT60 (T:370-408)
1bi: PFAM_WD40_1vyhT61 (T:370-408)
1bj: PFAM_WD40_1vyhT62 (T:370-408)
1bk: PFAM_WD40_1vyhT63 (T:370-408)
1bl: PFAM_WD40_1vyhT64 (T:370-408)
1bm: PFAM_WD40_1vyhT65 (T:370-408)
1bn: PFAM_WD40_1vyhT66 (T:370-408)
1bo: PFAM_WD40_1vyhT67 (T:370-408)
1bp: PFAM_WD40_1vyhT68 (T:370-408)
1bq: PFAM_WD40_1vyhT69 (T:370-408)
1br: PFAM_WD40_1vyhT70 (T:370-408)
2a: PFAM_Lipase_GDSL_2_1vyhR01 (R:43-205)
2b: PFAM_Lipase_GDSL_2_1vyhR02 (R:43-205)
2c: PFAM_Lipase_GDSL_2_1vyhR03 (R:43-205)
2d: PFAM_Lipase_GDSL_2_1vyhR04 (R:43-205)
2e: PFAM_Lipase_GDSL_2_1vyhR05 (R:43-205)
2f: PFAM_Lipase_GDSL_2_1vyhR06 (R:43-205)
2g: PFAM_Lipase_GDSL_2_1vyhR07 (R:43-205)
2h: PFAM_Lipase_GDSL_2_1vyhR08 (R:43-205)
2i: PFAM_Lipase_GDSL_2_1vyhR09 (R:43-205)
2j: PFAM_Lipase_GDSL_2_1vyhR10 (R:43-205)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Mus musculus (Mouse)
(4)
1a
WD40-1vyhT01
T:370-408
1b
WD40-1vyhT02
T:370-408
1c
WD40-1vyhT03
T:370-408
1d
WD40-1vyhT04
T:370-408
1e
WD40-1vyhT05
T:370-408
1f
WD40-1vyhT06
T:370-408
1g
WD40-1vyhT07
T:370-408
1h
WD40-1vyhT08
T:370-408
1i
WD40-1vyhT09
T:370-408
1j
WD40-1vyhT10
T:370-408
1k
WD40-1vyhT11
T:370-408
1l
WD40-1vyhT12
T:370-408
1m
WD40-1vyhT13
T:370-408
1n
WD40-1vyhT14
T:370-408
1o
WD40-1vyhT15
T:370-408
1p
WD40-1vyhT16
T:370-408
1q
WD40-1vyhT17
T:370-408
1r
WD40-1vyhT18
T:370-408
1s
WD40-1vyhT19
T:370-408
1t
WD40-1vyhT20
T:370-408
1u
WD40-1vyhT21
T:370-408
1v
WD40-1vyhT22
T:370-408
1w
WD40-1vyhT23
T:370-408
1x
WD40-1vyhT24
T:370-408
1y
WD40-1vyhT25
T:370-408
1z
WD40-1vyhT26
T:370-408
1aa
WD40-1vyhT27
T:370-408
1ab
WD40-1vyhT28
T:370-408
1ac
WD40-1vyhT29
T:370-408
1ad
WD40-1vyhT30
T:370-408
1ae
WD40-1vyhT31
T:370-408
1af
WD40-1vyhT32
T:370-408
1ag
WD40-1vyhT33
T:370-408
1ah
WD40-1vyhT34
T:370-408
1ai
WD40-1vyhT35
T:370-408
1aj
WD40-1vyhT36
T:370-408
1ak
WD40-1vyhT37
T:370-408
1al
WD40-1vyhT38
T:370-408
1am
WD40-1vyhT39
T:370-408
1an
WD40-1vyhT40
T:370-408
1ao
WD40-1vyhT41
T:370-408
1ap
WD40-1vyhT42
T:370-408
1aq
WD40-1vyhT43
T:370-408
1ar
WD40-1vyhT44
T:370-408
1as
WD40-1vyhT45
T:370-408
1at
WD40-1vyhT46
T:370-408
1au
WD40-1vyhT47
T:370-408
1av
WD40-1vyhT48
T:370-408
1aw
WD40-1vyhT49
T:370-408
1ax
WD40-1vyhT50
T:370-408
1ay
WD40-1vyhT51
T:370-408
1az
WD40-1vyhT52
T:370-408
1ba
WD40-1vyhT53
T:370-408
1bb
WD40-1vyhT54
T:370-408
1bc
WD40-1vyhT55
T:370-408
1bd
WD40-1vyhT56
T:370-408
1be
WD40-1vyhT57
T:370-408
1bf
WD40-1vyhT58
T:370-408
1bg
WD40-1vyhT59
T:370-408
1bh
WD40-1vyhT60
T:370-408
1bi
WD40-1vyhT61
T:370-408
1bj
WD40-1vyhT62
T:370-408
1bk
WD40-1vyhT63
T:370-408
1bl
WD40-1vyhT64
T:370-408
1bm
WD40-1vyhT65
T:370-408
1bn
WD40-1vyhT66
T:370-408
1bo
WD40-1vyhT67
T:370-408
1bp
WD40-1vyhT68
T:370-408
1bq
WD40-1vyhT69
T:370-408
1br
WD40-1vyhT70
T:370-408
Clan
:
SGNH_hydrolase
(17)
Family
:
Lipase_GDSL_2
(10)
Homo sapiens (Human)
(1)
2a
Lipase_GDSL_2-1vyhR01
R:43-205
2b
Lipase_GDSL_2-1vyhR02
R:43-205
2c
Lipase_GDSL_2-1vyhR03
R:43-205
2d
Lipase_GDSL_2-1vyhR04
R:43-205
2e
Lipase_GDSL_2-1vyhR05
R:43-205
2f
Lipase_GDSL_2-1vyhR06
R:43-205
2g
Lipase_GDSL_2-1vyhR07
R:43-205
2h
Lipase_GDSL_2-1vyhR08
R:43-205
2i
Lipase_GDSL_2-1vyhR09
R:43-205
2j
Lipase_GDSL_2-1vyhR10
R:43-205
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Asym.Unit (812 KB)
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Biol.Unit 3 (171 KB)
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