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1VSJ
Biol. Unit 1
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Asym.Unit (32 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
ASV INTEGRASE CORE DOMAIN WITH CD(II) COFACTORS
Authors
:
G. Bujacz, J. Alexandratos, A. Wlodawer
Date
:
04 Mar 97 (Deposition) - 15 May 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Endonuclease, Hydrolase, Endoribonuclease, Rna-Directed Dna Polymerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Bujacz, J. Alexandratos, A. Wlodawer, G. Merkel, M. Andrake, R. A. Katz, A. M. Skalka
Binding Of Different Divalent Cations To The Active Site Of Avian Sarcoma Virus Integrase And Their Effects On Enzymatic Activity.
J. Biol. Chem. V. 272 18161 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: HYDROXYETHYLCYSTEINE (OCYa)
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No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
OCY
2
Mod. Amino Acid
HYDROXYETHYLCYSTEINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: ACT (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:64 , ASP A:121 , HOH A:281 , HOH A:282 , HOH A:283 , HOH A:284
BINDING SITE FOR RESIDUE CD A 280
2
AC2
SOFTWARE
ASP A:64 , GLU A:157 , HOH A:283 , HOH A:292
BINDING SITE FOR RESIDUE CD A 290
3
AC3
SOFTWARE
PRO A:73 , SER A:75 , TRP A:76 , GLY A:94 , ARG A:95 , VAL A:96 , ARG A:137 , TRP A:138 , LYS A:166 , ALA A:195 , HOH A:364 , HOH A:367
BINDING SITE FOR RESIDUE EPE A 261
4
ACT
AUTHOR
ASP A:64 , ASP A:121 , GLU A:157
ACTIVE SITE
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1vsja_ (A:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Retroviral integrase, catalytic domain
(152)
Protein domain
:
Retroviral integrase, catalytic domain
(62)
Rous sarcoma virus RSV [TaxId: 11886]
(23)
1a
d1vsja_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1vsjA00 (A:54-199)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Rous sarcoma virus (strain schmidt- ruppin). Organism_taxid: 11889. Strain: schmidt-ruppin.
(11)
1a
1vsjA00
A:54-199
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_rve_1vsjA01 (A:54-167)
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Clan
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RNase_H
(288)
Family
:
rve
(46)
Rous sarcoma virus (strain Schmidt-Ruppin B) (RSV-SRB)
(7)
1a
rve-1vsjA01
A:54-167
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Asym.Unit (32 KB)
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