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1VEW
Asym. Unit
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Asym.Unit (145 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
MANGANESE SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI
Authors
:
R. A. Edwards, H. M. Baker, M. M. Whittaker, J. W. Whittaker, G. B. Jameson, E. N. Baker
Date
:
20 Jan 98 (Deposition) - 27 May 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Superoxide Dismutase, Manganese Enzyme, Metalloprotein, Dna Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. A. Edwards, H. M. Baker, M. M. Whittaker, J. W. Whittaker, G. B. Jameson, E. N. Baker
Crystal Structure Of Escherichia Coli Manganese Superoxide Dismutase At 2. 1-Angstrom Resolution.
J. Biol. Inorg. Chem. V. 3 161 1998
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: HYDROXIDE ION (OHa)
2b: HYDROXIDE ION (OHb)
2c: HYDROXIDE ION (OHc)
2d: HYDROXIDE ION (OHd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
OH
4
Ligand/Ion
HYDROXIDE ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: MN1 (UNKNOWN)
10: MN2 (UNKNOWN)
11: MN3 (UNKNOWN)
12: MN4 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:26 , HIS A:81 , ASP A:167 , HIS A:171 , OH A:207
BINDING SITE FOR RESIDUE MN A 206
02
AC2
SOFTWARE
HIS A:81 , GLN A:146 , ASP A:167 , TRP A:169 , HIS A:171 , MN A:206
BINDING SITE FOR RESIDUE OH A 207
03
AC3
SOFTWARE
HIS B:26 , HIS B:81 , ASP B:167 , HIS B:171 , OH B:207
BINDING SITE FOR RESIDUE MN B 206
04
AC4
SOFTWARE
HIS B:81 , GLN B:146 , ASP B:167 , TRP B:169 , HIS B:171 , MN B:206
BINDING SITE FOR RESIDUE OH B 207
05
AC5
SOFTWARE
HIS C:26 , HIS C:81 , ASP C:167 , HIS C:171 , OH C:207
BINDING SITE FOR RESIDUE MN C 206
06
AC6
SOFTWARE
HIS C:81 , GLN C:146 , ASP C:167 , TRP C:169 , HIS C:171 , MN C:206
BINDING SITE FOR RESIDUE OH C 207
07
AC7
SOFTWARE
HIS D:26 , HIS D:81 , ASP D:167 , HIS D:171 , OH D:207
BINDING SITE FOR RESIDUE MN D 206
08
AC8
SOFTWARE
HIS D:81 , GLN D:146 , ASP D:167 , TRP D:169 , HIS D:171 , MN D:206
BINDING SITE FOR RESIDUE OH D 207
09
MN1
UNKNOWN
MN A:206 , HIS A:26 , HIS A:81 , ASP A:167 , HIS A:171 , OH A:207
MANGANESE-BOUND ACTIVE SITE ON CHAIN A. CATALYTIC REDOX CENTER.
10
MN2
UNKNOWN
MN B:206 , HIS B:26 , HIS B:81 , ASP B:167 , HIS B:171 , OH B:207
MANGANESE-BOUND ACTIVE SITE ON CHAIN B. CATALYTIC REDOX CENTER.
11
MN3
UNKNOWN
MN C:206 , HIS C:26 , HIS C:81 , ASP C:167 , HIS C:171 , OH C:207
MANGANESE-BOUND ACTIVE SITE ON CHAIN C. CATALYTIC REDOX CENTER.
12
MN4
UNKNOWN
MN D:206 , HIS D:26 , HIS D:81 , ASP D:167 , HIS D:171 , OH D:207
MANGANESE-BOUND ACTIVE SITE ON CHAIN D. CATALYTIC REDOX CENTER.
[
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]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_SODM_ECOLI_001 (M164L, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_SODM_ECOLI_001
*
M
165
L
SODM_ECOLI
---
---
A/B/C/D
M
164
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_MN (A:167-174,B:167-174,C:167-174,D:16...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_MN
PS00088
Manganese and iron superoxide dismutases signature.
SODM_ECOLI
168-175
4
A:167-174
B:167-174
C:167-174
D:167-174
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1vewa1 (A:1-90)
1b: SCOP_d1vewb1 (B:1-90)
1c: SCOP_d1vewc1 (C:1-90)
1d: SCOP_d1vewd1 (D:1-90)
2a: SCOP_d1vewa2 (A:91-205)
2b: SCOP_d1vewb2 (B:91-205)
2c: SCOP_d1vewc2 (C:91-205)
2d: SCOP_d1vewd2 (D:91-205)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Long alpha-hairpin
(315)
Superfamily
:
Fe,Mn superoxide dismutase (SOD), N-terminal domain
(122)
Family
:
Fe,Mn superoxide dismutase (SOD), N-terminal domain
(80)
Protein domain
:
Mn superoxide dismutase (MnSOD)
(47)
Escherichia coli [TaxId: 562]
(12)
1a
d1vewa1
A:1-90
1b
d1vewb1
B:1-90
1c
d1vewc1
C:1-90
1d
d1vewd1
D:1-90
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fe,Mn superoxide dismutase (SOD), C-terminal domain
(122)
Superfamily
:
Fe,Mn superoxide dismutase (SOD), C-terminal domain
(122)
Family
:
Fe,Mn superoxide dismutase (SOD), C-terminal domain
(82)
Protein domain
:
Mn superoxide dismutase (MnSOD)
(47)
Escherichia coli [TaxId: 562]
(12)
2a
d1vewa2
A:91-205
2b
d1vewb2
B:91-205
2c
d1vewc2
C:91-205
2d
d1vewd2
D:91-205
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Sod_Fe_C_1vewD01 (D:92-201)
1b: PFAM_Sod_Fe_C_1vewD02 (D:92-201)
1c: PFAM_Sod_Fe_C_1vewD03 (D:92-201)
1d: PFAM_Sod_Fe_C_1vewD04 (D:92-201)
2a: PFAM_Sod_Fe_N_1vewD05 (D:1-89)
2b: PFAM_Sod_Fe_N_1vewD06 (D:1-89)
2c: PFAM_Sod_Fe_N_1vewD07 (D:1-89)
2d: PFAM_Sod_Fe_N_1vewD08 (D:1-89)
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Clans
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Families
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)
Organisms
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)
(
)
Clan
:
no clan defined [family: Sod_Fe_C]
(46)
Family
:
Sod_Fe_C
(46)
Escherichia coli (strain K12)
(7)
1a
Sod_Fe_C-1vewD01
D:92-201
1b
Sod_Fe_C-1vewD02
D:92-201
1c
Sod_Fe_C-1vewD03
D:92-201
1d
Sod_Fe_C-1vewD04
D:92-201
Clan
:
no clan defined [family: Sod_Fe_N]
(46)
Family
:
Sod_Fe_N
(46)
Escherichia coli (strain K12)
(7)
2a
Sod_Fe_N-1vewD05
D:1-89
2b
Sod_Fe_N-1vewD06
D:1-89
2c
Sod_Fe_N-1vewD07
D:1-89
2d
Sod_Fe_N-1vewD08
D:1-89
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Asym.Unit (145 KB)
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