10 20 30 40 50 60 70 80 1VEW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER OXIDOREDUCTASE 20-JAN-98 1VEW
TITLE MANGANESE SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MNSOD, MNSD; COMPND 5 EC: 1.15.1.1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: AB2463/PDT1-5
KEYWDS SUPEROXIDE DISMUTASE, MANGANESE ENZYME, METALLOPROTEIN, DNA KEYWDS 2 BINDING, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.A.EDWARDS,H.M.BAKER,M.M.WHITTAKER,J.W.WHITTAKER, AUTHOR 2 G.B.JAMESON,E.N.BAKER
REVDAT 2 24-FEB-09 1VEW 1 VERSN REVDAT 1 27-MAY-98 1VEW 0
JRNL AUTH R.A.EDWARDS,H.M.BAKER,M.M.WHITTAKER,J.W.WHITTAKER, JRNL AUTH 2 G.B.JAMESON,E.N.BAKER JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI MANGANESE JRNL TITL 2 SUPEROXIDE DISMUTASE AT 2.1-ANGSTROM RESOLUTION. JRNL REF J.BIOL.INORG.CHEM. V. 3 161 1998 JRNL REFN ISSN 0949-8257
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT V. 5-E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 53872 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2874 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1860 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1880 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2874 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 53872 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 23.300 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.010 ; 0.400 ; 6716 REMARK 3 BOND ANGLES (DEGREES) : 1.200 ; 0.600 ; 9072 REMARK 3 TORSION ANGLES (DEGREES) : 15.600; 1.200 ; 3892 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.015 ; 0.650 ; 180 REMARK 3 GENERAL PLANES (A) : 0.016 ; 2.200 ; 968 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 1.600 ; 3.400 ; 6700 REMARK 3 NON-BONDED CONTACTS (A) : 0.114 ; 2.000 ; 2157 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS AND KRETSINGER (J.MOL.BIOL.(1975)91, 201- REMARK 3 228) REMARK 3 KSOL : 0.83 REMARK 3 BSOL : 130.00 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT CSDX-PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1VEW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-C REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : 0.3MM DIAMETER COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 0.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1MNG REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN AT ROOM REMARK 280 TEMPERATURE USING THE HANGING DROP METHOD. THE HANGING DROPS REMARK 280 WERE SUSPENDED OVER 0.75ML OF WELL SOLUTION (16-30% PEG6000 REMARK 280 AND 0.05M BICINE TITRATED TO PH8.5) AND CONSISTED OF 2UL OF REMARK 280 WELL SOLUTION AND 2UL OF PROTEIN SOLUTION (MNSOD AT 12MG/ML IN REMARK 280 WATER)., VAPOR DIFFUSION - HANGING DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.42000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.42000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.05000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.42000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.45500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.05000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.42000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.45500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 214 LIES ON A SPECIAL POSITION.
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 47 CG CD OE1 OE2 REMARK 480 ASN A 50 CG OD1 ND2 REMARK 480 LYS A 137 CG CD CE NZ REMARK 480 LYS A 186 CG CD CE NZ REMARK 480 LYS A 205 CG CD CE NZ OXT REMARK 480 GLU B 47 CG CD OE1 OE2 REMARK 480 ASN B 50 CG OD1 ND2 REMARK 480 ASP B 61 CG OD1 OD2 REMARK 480 LYS B 137 CG CD CE NZ REMARK 480 LYS B 186 CG CD CE NZ REMARK 480 LYS B 205 CG CD CE NZ OXT REMARK 480 GLU C 47 CG CD OE1 OE2 REMARK 480 ASN C 50 CG OD1 ND2 REMARK 480 LYS C 137 CG CD CE NZ REMARK 480 LYS C 186 CG CD CE NZ REMARK 480 LYS C 205 CG CD CE NZ OXT REMARK 480 GLU D 47 CG CD OE1 OE2 REMARK 480 ASN D 50 CG OD1 ND2 REMARK 480 LYS D 137 CG CD CE NZ REMARK 480 LYS D 186 CG CD CE NZ REMARK 480 LYS D 205 CG CD CE NZ OXT
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 89 139.96 -178.19 REMARK 500 ASN A 145 -112.73 49.11 REMARK 500 GLN A 178 -125.53 57.77 REMARK 500 LYS A 204 -12.14 71.05 REMARK 500 LEU B 45 77.40 -115.84 REMARK 500 LYS B 89 139.50 -174.99 REMARK 500 ASN B 145 -113.21 50.21 REMARK 500 TYR B 173 -5.25 -141.86 REMARK 500 GLN B 178 -126.98 57.75 REMARK 500 LYS B 204 -10.51 70.58 REMARK 500 LYS C 29 -60.04 -108.64 REMARK 500 LYS C 89 141.28 -176.81 REMARK 500 ASN C 145 -113.12 49.90 REMARK 500 TYR C 173 -6.64 -140.14 REMARK 500 GLN C 178 -126.27 58.18 REMARK 500 LYS C 204 -13.02 70.64 REMARK 500 LYS D 89 141.21 -174.16 REMARK 500 ASN D 145 -113.16 49.48 REMARK 500 TYR D 173 -5.75 -141.70 REMARK 500 GLN D 178 -124.94 59.30 REMARK 500 LYS D 204 -8.08 69.35 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 206 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 81 NE2 91.2 REMARK 620 3 ASP A 167 OD2 92.5 107.7 REMARK 620 4 HIS A 171 NE2 93.7 129.4 122.3 REMARK 620 5 OH A 207 O 176.0 91.4 83.8 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 206 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 81 NE2 93.2 REMARK 620 3 ASP B 167 OD2 93.3 108.3 REMARK 620 4 HIS B 171 NE2 94.9 129.7 120.7 REMARK 620 5 OH B 207 O 173.1 90.9 80.2 86.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 206 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 81 NE2 91.3 REMARK 620 3 ASP C 167 OD2 90.5 108.3 REMARK 620 4 HIS C 171 NE2 93.0 130.3 121.1 REMARK 620 5 OH C 207 O 174.8 90.7 84.4 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 206 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 26 NE2 REMARK 620 2 HIS D 81 NE2 91.8 REMARK 620 3 ASP D 167 OD2 92.8 105.9 REMARK 620 4 HIS D 171 NE2 93.8 131.0 122.3 REMARK 620 5 OH D 207 O 176.3 90.2 83.7 87.2 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: MANGANESE-BOUND ACTIVE SITE ON CHAIN A. REMARK 800 CATALYTIC REDOX CENTER. REMARK 800 SITE_IDENTIFIER: MN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: MANGANESE-BOUND ACTIVE SITE ON CHAIN B. REMARK 800 CATALYTIC REDOX CENTER. REMARK 800 SITE_IDENTIFIER: MN3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: MANGANESE-BOUND ACTIVE SITE ON CHAIN C. REMARK 800 CATALYTIC REDOX CENTER. REMARK 800 SITE_IDENTIFIER: MN4 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: MANGANESE-BOUND ACTIVE SITE ON CHAIN D. REMARK 800 CATALYTIC REDOX CENTER. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 206 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 207 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 206 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH B 207 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 206 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH C 207 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 206 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH D 207
DBREF 1VEW A 1 205 UNP P00448 SODM_ECOLI 1 205 DBREF 1VEW B 1 205 UNP P00448 SODM_ECOLI 1 205 DBREF 1VEW C 1 205 UNP P00448 SODM_ECOLI 1 205 DBREF 1VEW D 1 205 UNP P00448 SODM_ECOLI 1 205
SEQRES 1 A 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 A 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 A 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 A 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 A 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 A 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 A 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 A 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 A 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 A 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 A 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 A 205 ALA ASN GLN ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 A 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 A 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 A 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 A 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS SEQRES 1 B 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 B 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 B 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 B 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 B 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 B 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 B 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 B 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 B 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 B 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 B 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 B 205 ALA ASN GLN ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 B 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 B 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 B 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 B 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS SEQRES 1 C 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 C 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 C 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 C 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 C 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 C 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 C 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 C 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 C 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 C 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 C 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 C 205 ALA ASN GLN ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 C 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 C 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 C 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 C 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS SEQRES 1 D 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 D 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 D 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 D 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 D 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 D 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 D 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 D 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 D 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 D 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 D 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 D 205 ALA ASN GLN ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 D 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 D 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 D 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 D 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS
HET MN A 206 1 HET OH A 207 1 HET MN B 206 1 HET OH B 207 1 HET MN C 206 1 HET OH C 207 1 HET MN D 206 1 HET OH D 207 1
HETNAM MN MANGANESE (II) ION HETNAM OH HYDROXIDE ION
FORMUL 5 MN 4(MN 2+) FORMUL 6 OH 4(H O 1-) FORMUL 13 HOH *411(H2 O)
HELIX 1 1 LYS A 20 THR A 28 1 9 HELIX 2 2 HIS A 30 SER A 44 1 15 HELIX 3 3 PRO A 46 ALA A 49 1 4 HELIX 4 4 VAL A 53 THR A 58 1 6 HELIX 5 5 LEU A 60 GLN A 62 5 3 HELIX 6 6 ALA A 65 LYS A 86 1 22 HELIX 7 7 GLY A 96 PHE A 106 1 11 HELIX 8 8 VAL A 109 SER A 122 1 14 HELIX 9 9 PRO A 149 MET A 151 5 3 HELIX 10 10 GLU A 153 SER A 156 1 4 HELIX 11 11 GLU A 170 ALA A 172 5 3 HELIX 12 12 TYR A 174 PHE A 177 1 4 HELIX 13 13 ARG A 181 ASN A 190 1 10 HELIX 14 14 TRP A 194 ALA A 203 1 10 HELIX 15 15 LYS B 20 THR B 28 1 9 HELIX 16 16 HIS B 30 LEU B 42 1 13 HELIX 17 17 PRO B 46 ALA B 49 1 4 HELIX 18 18 VAL B 53 THR B 58 1 6 HELIX 19 19 LEU B 60 GLN B 62 5 3 HELIX 20 20 ALA B 65 LYS B 86 1 22 HELIX 21 21 GLY B 96 PHE B 106 1 11 HELIX 22 22 VAL B 109 SER B 122 1 14 HELIX 23 23 PRO B 149 MET B 151 5 3 HELIX 24 24 GLU B 153 SER B 156 1 4 HELIX 25 25 GLU B 170 ALA B 172 5 3 HELIX 26 26 TYR B 174 PHE B 177 1 4 HELIX 27 27 ARG B 181 ASN B 190 1 10 HELIX 28 28 TRP B 194 ALA B 203 1 10 HELIX 29 29 LYS C 20 THR C 28 1 9 HELIX 30 30 HIS C 30 SER C 44 1 15 HELIX 31 31 PRO C 46 ALA C 49 1 4 HELIX 32 32 VAL C 53 THR C 58 1 6 HELIX 33 33 LEU C 60 GLN C 62 5 3 HELIX 34 34 ALA C 65 LYS C 86 1 22 HELIX 35 35 GLY C 96 PHE C 106 1 11 HELIX 36 36 VAL C 109 SER C 122 1 14 HELIX 37 37 PRO C 149 MET C 151 5 3 HELIX 38 38 GLU C 153 SER C 156 1 4 HELIX 39 39 GLU C 170 ALA C 172 5 3 HELIX 40 40 TYR C 174 PHE C 177 1 4 HELIX 41 41 ARG C 181 ASN C 190 1 10 HELIX 42 42 TRP C 194 ALA C 203 1 10 HELIX 43 43 LYS D 20 THR D 28 1 9 HELIX 44 44 HIS D 30 LEU D 42 1 13 HELIX 45 45 PRO D 46 ALA D 49 1 4 HELIX 46 46 VAL D 53 THR D 58 1 6 HELIX 47 47 LEU D 60 GLN D 62 5 3 HELIX 48 48 ALA D 65 LYS D 86 1 22 HELIX 49 49 GLY D 96 PHE D 106 1 11 HELIX 50 50 VAL D 109 SER D 122 1 14 HELIX 51 51 PRO D 149 MET D 151 5 3 HELIX 52 52 GLU D 153 SER D 156 1 4 HELIX 53 53 GLU D 170 ALA D 172 5 3 HELIX 54 54 TYR D 174 PHE D 177 1 4 HELIX 55 55 ARG D 181 ASN D 190 1 10 HELIX 56 56 TRP D 194 ALA D 203 1 10
SHEET 1 A 3 LYS A 137 ALA A 144 0 SHEET 2 A 3 GLY A 127 LYS A 134 -1 N LYS A 134 O LYS A 137 SHEET 3 A 3 PHE A 161 ASP A 167 -1 N LEU A 166 O ALA A 129 SHEET 1 B 3 LYS B 137 ALA B 144 0 SHEET 2 B 3 GLY B 127 LYS B 134 -1 N LYS B 134 O LYS B 137 SHEET 3 B 3 PHE B 161 ASP B 167 -1 N LEU B 166 O ALA B 129 SHEET 1 C 3 LYS C 137 ALA C 144 0 SHEET 2 C 3 GLY C 127 LYS C 134 -1 N LYS C 134 O LYS C 137 SHEET 3 C 3 PHE C 161 ASP C 167 -1 N LEU C 166 O ALA C 129 SHEET 1 D 3 LYS D 137 ALA D 144 0 SHEET 2 D 3 GLY D 127 LYS D 134 -1 N LYS D 134 O LYS D 137 SHEET 3 D 3 PHE D 161 ASP D 167 -1 N LEU D 166 O ALA D 129
LINK MN MN A 206 NE2 HIS A 26 1555 1555 2.15 LINK MN MN A 206 NE2 HIS A 81 1555 1555 2.22 LINK MN MN A 206 OD2 ASP A 167 1555 1555 2.01 LINK MN MN A 206 NE2 HIS A 171 1555 1555 2.16 LINK MN MN A 206 O OH A 207 1555 1555 2.16 LINK MN MN B 206 NE2 HIS B 26 1555 1555 2.09 LINK MN MN B 206 NE2 HIS B 81 1555 1555 2.21 LINK MN MN B 206 OD2 ASP B 167 1555 1555 2.03 LINK MN MN B 206 NE2 HIS B 171 1555 1555 2.17 LINK MN MN B 206 O OH B 207 1555 1555 2.18 LINK MN MN C 206 NE2 HIS C 26 1555 1555 2.20 LINK MN MN C 206 NE2 HIS C 81 1555 1555 2.20 LINK MN MN C 206 OD2 ASP C 167 1555 1555 2.02 LINK MN MN C 206 NE2 HIS C 171 1555 1555 2.15 LINK MN MN C 206 O OH C 207 1555 1555 2.28 LINK MN MN D 206 NE2 HIS D 26 1555 1555 2.12 LINK MN MN D 206 NE2 HIS D 81 1555 1555 2.21 LINK MN MN D 206 OD2 ASP D 167 1555 1555 2.01 LINK MN MN D 206 NE2 HIS D 171 1555 1555 2.18 LINK MN MN D 206 O OH D 207 1555 1555 2.20
HYDBND O OH A 207 OD1 ASP A 167 1555 1555 HYDBND OH TYR A 34 NE2 GLN A 146 1555 1555 HYDBND O OH A 207 NE2 GLN A 146 1555 1555 HYDBND OE1 GLN A 146 ND2 ASN A 80 1555 1555 HYDBND OE1 GLN A 146 NE1 TRP A 128 1555 1555 HYDBND O OH B 207 OD1 ASP B 167 1555 1555 HYDBND OH TYR B 34 NE2 GLN B 146 1555 1555 HYDBND O OH B 207 NE2 GLN B 146 1555 1555 HYDBND OE1 GLN B 146 ND2 ASN B 80 1555 1555 HYDBND OE1 GLN B 146 NE1 TRP B 128 1555 1555 HYDBND O OH C 207 OD1 ASP C 167 1555 1555 HYDBND OH TYR C 34 NE2 GLN C 146 1555 1555 HYDBND O OH C 207 NE2 GLN C 146 1555 1555 HYDBND OE1 GLN C 146 ND2 ASN C 80 1555 1555 HYDBND OE1 GLN C 146 NE1 TRP C 128 1555 1555 HYDBND O OH D 207 OD1 ASP D 167 1555 1555 HYDBND OH TYR D 34 NE2 GLN D 146 1555 1555 HYDBND O OH D 207 NE2 GLN D 146 1555 1555 HYDBND OE1 GLN D 146 ND2 ASN D 80 1555 1555 HYDBND OE1 GLN D 146 NE1 TRP D 128 1555 1555
CISPEP 1 GLU A 15 PRO A 16 0 3.25 CISPEP 2 GLU B 15 PRO B 16 0 3.50 CISPEP 3 GLU C 15 PRO C 16 0 4.02 CISPEP 4 GLU D 15 PRO D 16 0 3.91
SITE 1 MN1 6 MN A 206 HIS A 26 HIS A 81 ASP A 167 SITE 2 MN1 6 HIS A 171 OH A 207 SITE 1 MN2 6 MN B 206 HIS B 26 HIS B 81 ASP B 167 SITE 2 MN2 6 HIS B 171 OH B 207 SITE 1 MN3 6 MN C 206 HIS C 26 HIS C 81 ASP C 167 SITE 2 MN3 6 HIS C 171 OH C 207 SITE 1 MN4 6 MN D 206 HIS D 26 HIS D 81 ASP D 167 SITE 2 MN4 6 HIS D 171 OH D 207 SITE 1 AC1 5 HIS A 26 HIS A 81 ASP A 167 HIS A 171 SITE 2 AC1 5 OH A 207 SITE 1 AC2 6 HIS A 81 GLN A 146 ASP A 167 TRP A 169 SITE 2 AC2 6 HIS A 171 MN A 206 SITE 1 AC3 5 HIS B 26 HIS B 81 ASP B 167 HIS B 171 SITE 2 AC3 5 OH B 207 SITE 1 AC4 6 HIS B 81 GLN B 146 ASP B 167 TRP B 169 SITE 2 AC4 6 HIS B 171 MN B 206 SITE 1 AC5 5 HIS C 26 HIS C 81 ASP C 167 HIS C 171 SITE 2 AC5 5 OH C 207 SITE 1 AC6 6 HIS C 81 GLN C 146 ASP C 167 TRP C 169 SITE 2 AC6 6 HIS C 171 MN C 206 SITE 1 AC7 5 HIS D 26 HIS D 81 ASP D 167 HIS D 171 SITE 2 AC7 5 OH D 207 SITE 1 AC8 6 HIS D 81 GLN D 146 ASP D 167 TRP D 169 SITE 2 AC8 6 HIS D 171 MN D 206
CRYST1 100.840 108.910 182.100 90.00 90.00 90.00 C 2 2 21 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009917 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009182 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005491 0.00000
MTRIX1 1 -0.134086 0.977846 0.160742 10.10900 1
MTRIX2 1 0.977948 0.104362 0.180905 -12.66800 1
MTRIX3 1 0.160122 0.181454 -0.970276 22.89400 1
MTRIX1 2 -0.079286 -0.996480 0.027237 103.40800 1
MTRIX2 2 -0.996167 0.080214 0.034875 51.43100 1
MTRIX3 2 -0.036937 -0.024368 -0.999020 46.99400 1
MTRIX1 3 -0.956616 -0.172522 -0.234782 115.99900 1
MTRIX2 3 0.217210 -0.959375 -0.180053 41.21000 1
MTRIX3 3 -0.194181 -0.223239 0.955227 24.59400 1