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Asym. Unit
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Asym.Unit (190 KB)
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Models
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Title
:
SOLUTION STRUCTURES OF UBIQUITIN AT 30 BAR AND 3 KBAR
Authors
:
R. Kitahara, S. Yokoyama, K. Akasaka, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
27 Dec 03 (Deposition) - 15 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Pressure, Signaling Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kitahara, S. Yokoyama, K. Akasaka
Nmr Snapshots Of A Fluctuating Protein Structure: Ubiquitin At 30 Bar-3 Kbar.
J. Mol. Biol. V. 347 277 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-76,A:1-76,-|-|A:1-76|-,-|-|-|-...)
2: UBIQUITIN_1 (A:27-52,A:27-52,-|-|A:27-52|-,-|-|...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_BOVIN
1-76
1
A:1-76
RL40_BOVIN
1-76
1
A:1-76
UBB_BOVIN
1-76
77-152
153-228
229-304
1
-
-
A:1-76
-
UBC_BOVIN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
A:1-76
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_BOVIN
27-52
1
A:27-52
RL40_BOVIN
27-52
1
A:27-52
UBB_BOVIN
27-52
103-128
179-204
255-280
1
-
-
A:27-52
-
UBC_BOVIN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
A:27-52
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1v80a_ (A:)
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Protein Domains
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Organisms
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)
(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Cow (Bos taurus) [TaxId: 9913]
(4)
1a
d1v80a_
A:
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CATH Domains
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1a: CATH_1v80A00 (A:1-76)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Cattle (Bos taurus)
(10)
1a
1v80A00
A:1-76
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_ubiquitin_1v80A01 (A:6-74)
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Clan
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Ubiquitin
(279)
Family
:
ubiquitin
(99)
Bos taurus (Bovine)
(12)
1a
ubiquitin-1v80A01
A:6-74
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