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1V0Z
Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (289 KB)
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(1)
Title
:
STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6
Authors
:
E. Rudino-Pinera, P. Tunnah, S. J. Crennell, R. G. Webster, W. G. Laver, E. F. Garman
Date
:
02 Apr 04 (Deposition) - 25 Jan 06 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Glycosidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Rudino-Pinera, S. J. Crennell, R. G. Webster, W. G. Laver, E. F. Garman
The Crystal Structure Of Influenza Type A Virus Neuraminidase Of The N6 Subtype At 1. 85 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(6, 47)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
4k: ALPHA-D-MANNOSE (MANk)
4l: ALPHA-D-MANNOSE (MANl)
4m: ALPHA-D-MANNOSE (MANm)
4n: ALPHA-D-MANNOSE (MANn)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
4
Ligand/Ion
CALCIUM ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
MAN
14
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:92 , LYS A:241 , NAG A:504 , HOH A:2610
BINDING SITE FOR RESIDUE NAG A1479
02
AC2
SOFTWARE
NAG A:503
BINDING SITE FOR RESIDUE NAG A1480
03
AC3
SOFTWARE
ASN A:152 , LEU A:445 , NAG C:501 , HOH A:2409 , HOH A:2509 , TYR C:474
BINDING SITE FOR RESIDUE NAG A1481
04
AC4
SOFTWARE
NAG A:505
BINDING SITE FOR RESIDUE NAG A1482
05
AC5
SOFTWARE
LEU A:384 , PRO A:397 , ASN A:400 , MAN A:508 , MAN A:509 , BMA A:510 , HOH A:2515
BINDING SITE FOR RESIDUE MAN A1483
06
AC6
SOFTWARE
ILE A:398 , SER A:399 , ASN A:400 , MAN A:507 , MAN A:511 , NAG A:512 , HOH A:2625 , HOH A:2575
BINDING SITE FOR RESIDUE BMA A1486
07
AC7
SOFTWARE
BMA A:510
BINDING SITE FOR RESIDUE MAN A1487
08
AC8
SOFTWARE
SER A:102 , SER A:399 , ASN A:400 , BMA A:510 , HOH A:2604 , NAG A:506
BINDING SITE FOR RESIDUE NAG A1495
09
AC9
SOFTWARE
ASP A:337 , ARG A:371 , MAN A:507 , HOH A:2464 , HOH A:2387
BINDING SITE FOR RESIDUE MAN A1484
10
BC1
SOFTWARE
GLU A:382 , LEU A:384 , ASN A:400 , VAL A:402 , MAN A:507 , HOH A:2414 , HOH A:2310 , HOH A:2476
BINDING SITE FOR RESIDUE MAN A1485
11
BC2
SOFTWARE
ASN A:207 , NAG A:516 , HOH A:2634 , HOH A:2314 , ARG C:460 , LEU C:461 , GLY C:462
BINDING SITE FOR RESIDUE NAG A1488
12
BC3
SOFTWARE
NAG A:515 , BMA A:517 , MAN A:518 , HOH A:2421 , ASN C:101 , SER C:399 , ASN C:400 , HOH C:603
BINDING SITE FOR RESIDUE NAG A1489
13
BC4
SOFTWARE
NAG A:516 , MAN A:518 , MAN A:520 , HOH A:2360 , HOH A:2335 , ILE C:398 , SER C:399 , ASN C:400
BINDING SITE FOR RESIDUE BMA A1490
14
BC5
SOFTWARE
NAG A:516 , BMA A:517 , MAN A:519 , HOH A:2533 , HOH A:2479 , HOH A:2532
BINDING SITE FOR RESIDUE MAN A1491
15
BC6
SOFTWARE
MAN A:518 , HOH A:2646 , HOH A:2345
BINDING SITE FOR RESIDUE MAN A1492
16
BC7
SOFTWARE
BMA A:517 , MAN A:521 , LEU C:384 , PRO C:397 , ASN C:400 , MAN A:514 , HOH C:878
BINDING SITE FOR RESIDUE MAN A1493
17
BC8
SOFTWARE
MAN A:520 , HOH A:2321 , HOH A:2489 , HOH A:2599 , HOH A:2308 , GLU C:382 , LEU C:384 , ASN C:400 , VAL C:402
BINDING SITE FOR RESIDUE MAN A1494
18
BC9
SOFTWARE
THR B:89 , ASN B:92 , HOH B:649 , HOH B:893
BINDING SITE FOR RESIDUE NAG B1479
19
CC1
SOFTWARE
TYR A:474 , ASN B:152 , LEU B:445 , NAG A:513 , HOH B:746 , HOH B:785
BINDING SITE FOR RESIDUE NAG B1480
20
CC2
SOFTWARE
NAG B:504
BINDING SITE FOR RESIDUE NAG B1481
21
CC3
SOFTWARE
LEU A:461 , NAG A:512 , ASN B:206 , ASN B:207 , HOH A:2305
BINDING SITE FOR RESIDUE NAG B1482
22
CC4
SOFTWARE
PRO B:397 , ASN B:400 , MAN B:506 , MAN B:509 , BMA B:507 , HOH B:706
BINDING SITE FOR RESIDUE MAN B1483
23
CC5
SOFTWARE
ILE B:398 , SER B:399 , ASN B:400 , MAN B:505 , NAG B:508
BINDING SITE FOR RESIDUE BMA B1486
24
CC6
SOFTWARE
ASN B:101 , SER B:399 , ASN B:400 , BMA B:507 , HOH B:731 , HOH B:705 , NAG D:508
BINDING SITE FOR RESIDUE NAG B1487
25
CC7
SOFTWARE
ASP B:337 , ARG B:371 , MAN B:505 , HOH B:626 , HOH B:818 , HOH B:656
BINDING SITE FOR RESIDUE MAN B1484
26
CC8
SOFTWARE
GLU B:382 , ASN B:400 , VAL B:402 , MAN B:505 , HOH B:648 , HOH B:748
BINDING SITE FOR RESIDUE MAN B1485
27
CC9
SOFTWARE
THR C:89 , PHE C:90 , ASN C:92
BINDING SITE FOR RESIDUE NAG C1480
28
DC1
SOFTWARE
ASN C:152 , NAG D:501 , HOH C:721 , HOH C:888 , HOH C:777 , HOH C:904 , TYR D:474 , HOH D:629
BINDING SITE FOR RESIDUE NAG C1481
29
DC2
SOFTWARE
NAG C:506 , HOH D:816 , ILE D:473
BINDING SITE FOR RESIDUE NAG C1482
30
DC3
SOFTWARE
ASN C:207 , NAG C:508 , LEU D:461 , GLY D:462 , SER D:463
BINDING SITE FOR RESIDUE NAG C1483
31
DC4
SOFTWARE
NAG C:507 , BMA D:502 , ASN D:101 , SER D:399 , ASN D:400 , ARG D:460
BINDING SITE FOR RESIDUE NAG C1484
32
DC5
SOFTWARE
MAN A:520 , ASP C:337 , ARG C:371 , HOH A:2592 , HOH A:2591 , HOH A:2483
BINDING SITE FOR RESIDUE MAN C1485
33
DC6
SOFTWARE
NAG C:508 , MAN D:503 , ILE D:398 , SER D:399 , ASN D:400
BINDING SITE FOR RESIDUE BMA C1486
34
DC7
SOFTWARE
BMA D:502 , LEU D:384 , ASN D:400 , MAN D:509 , HOH D:729
BINDING SITE FOR RESIDUE MAN C1487
35
DC8
SOFTWARE
PHE D:90 , ASN D:92 , THR D:94 , LYS D:241 , HOH D:609
BINDING SITE FOR RESIDUE NAG D1479
36
DC9
SOFTWARE
TYR B:474 , ASN D:152 , LEU D:445 , HOH D:652 , HOH D:873 , HOH D:803 , HOH D:809
BINDING SITE FOR RESIDUE NAG D1480
37
EC1
SOFTWARE
LEU B:461 , GLY B:462 , SER B:463 , NAG B:508 , HOH B:823 , ASN D:207 , HOH D:896
BINDING SITE FOR RESIDUE NAG D1481
38
EC2
SOFTWARE
MAN D:503 , ILE D:373 , HOH D:605 , HOH D:862 , HOH D:783 , HOH D:601
BINDING SITE FOR RESIDUE MAN D1483
39
EC3
SOFTWARE
ASP A:300 , GLY A:304 , ASP A:331 , PRO A:354 , HOH A:2420 , HOH A:2519
BINDING SITE FOR RESIDUE CA A1477
40
EC4
SOFTWARE
ASP B:300 , GLY B:304 , ASP B:331 , PRO B:354 , HOH B:738 , HOH B:763
BINDING SITE FOR RESIDUE CA B1477
41
EC5
SOFTWARE
ASP C:300 , GLY C:304 , ASP C:331 , PRO C:354 , HOH C:684 , HOH C:745
BINDING SITE FOR RESIDUE CA C1477
42
EC6
SOFTWARE
ASP D:300 , GLY D:304 , ASP D:331 , PRO D:354 , HOH D:654 , HOH D:720
BINDING SITE FOR RESIDUE CA D1477
43
EC7
SOFTWARE
GLN A:142 , HIS A:150 , ASN A:152 , SER A:159 , HOH A:2454 , HOH A:2553 , ARG C:113
BINDING SITE FOR RESIDUE GOL A1478
44
EC8
SOFTWARE
ARG A:113 , GLN B:142 , HIS B:150 , ASN B:152 , SER B:159
BINDING SITE FOR RESIDUE GOL B1478
45
EC9
SOFTWARE
PRO A:218 , ILE A:219 , GLU A:221 , HIS C:104 , LYS C:423 , ASN C:427 , CYS C:429 , CYS C:455 , GLY C:456 , HOH C:629 , HOH C:903 , HOH C:687
BINDING SITE FOR RESIDUE PEG C1478
46
FC1
SOFTWARE
GLN C:142 , HIS C:150 , ASN C:152 , SER C:159 , PHE C:161 , HOH C:711 , ARG D:113
BINDING SITE FOR RESIDUE GOL C1479
47
FC2
SOFTWARE
ARG B:113 , GLN D:142 , HIS D:150 , SER D:159 , HOH D:699 , HOH D:911
BINDING SITE FOR RESIDUE GOL D1478
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1v0za_ (A:)
1b: SCOP_d1v0zc_ (C:)
1c: SCOP_d1v0zd_ (D:)
1d: SCOP_d1v0zb_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d1v0za_
A:
1b
d1v0zc_
C:
1c
d1v0zd_
D:
1d
d1v0zb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1v0zA00 (A:88-476)
1b: CATH_1v0zB00 (B:88-476)
1c: CATH_1v0zC00 (C:88-476)
1d: CATH_1v0zD00 (D:88-476)
View:
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(
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(
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Architectures
(
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 11320.
(5)
1a
1v0zA00
A:88-476
1b
1v0zB00
B:88-476
1c
1v0zC00
C:88-476
1d
1v0zD00
D:88-476
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Neur_1v0zD01 (D:88-474)
1b: PFAM_Neur_1v0zD02 (D:88-474)
1c: PFAM_Neur_1v0zD03 (D:88-474)
1d: PFAM_Neur_1v0zD04 (D:88-474)
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Clans
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Organisms
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Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza A virus (strain A/Duck/England/1/1956 H11N6)
(4)
1a
Neur-1v0zD01
D:88-474
1b
Neur-1v0zD02
D:88-474
1c
Neur-1v0zD03
D:88-474
1d
Neur-1v0zD04
D:88-474
[
close Pfam info
]
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