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(1)
Title
:
THEORETICAL MODEL STRUCTURE OF HUMAN CYCLOOXGENASE-2
Authors
:
S. Mahanta, P. K. Sarma, A. K. Buragohain
Date
:
02 Apr 04 (Deposition) - 06 Apr 04 (Release) - 06 Apr 04 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Oxidoreductase, Dioxygenase, Peroxidase, Glycoprotein, Prostaglandin Biosynthesis, Heme, Iron
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Mahanta, P. K. Sarma, A. K. Buragohain
Theoretical Model Structure Of Human Cyclooxgenase-2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016262 (R228H, chain A, )
2: VAR_016263 (P428A, chain A, )
3: VAR_011980 (E488G, chain A, )
4: VAR_011981 (V511A, chain A, )
5: VAR_016264 (G587R, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016262
R
228
H
PGH2_HUMAN
Polymorphism
3218622
A
R
228
H
2
UniProt
VAR_016263
P
428
A
PGH2_HUMAN
Polymorphism
4648279
A
P
428
A
3
UniProt
VAR_011980
E
488
G
PGH2_HUMAN
Polymorphism
5272
A
E
488
G
4
UniProt
VAR_011981
V
511
A
PGH2_HUMAN
Polymorphism
5273
A
V
511
A
5
UniProt
VAR_016264
G
587
R
PGH2_HUMAN
Polymorphism
3218625
A
G
587
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:17-55)
2: PEROXIDASE_3 (A:97-598)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH2_HUMAN
17-55
1
A:17-55
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_HUMAN
97-598
1
A:97-598
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Exons
(10, 10)
Info
All Exons
Exon 1.1b (A:1-18)
Exon 1.2 (A:18-57)
Exon 1.3 (A:57-105)
Exon 1.4 (A:105-153)
Exon 1.5a (A:153-213)
Exon 1.6 (A:214-241)
Exon 1.7a (A:242-324)
Exon 1.7c (A:324-419)
Exon 1.8b (A:420-469)
Exon 1.9b (A:469-604)
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5a
06: Boundary 1.5a/1.6
07: Boundary 1.6/1.7a
08: Boundary 1.7a/1.7c
09: Boundary 1.7c/1.8b
10: Boundary 1.8b/1.9b
11: Boundary 1.9b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000367468
1b
ENSE00002152147
chr1:
186649555-186649371
185
PGH2_HUMAN
1-18
18
1
A:1-18
18
1.2
ENST00000367468
2
ENSE00000823081
chr1:
186648570-186648454
117
PGH2_HUMAN
18-57
40
1
A:18-57
40
1.3
ENST00000367468
3
ENSE00000790910
chr1:
186648333-186648190
144
PGH2_HUMAN
57-105
49
1
A:57-105
49
1.4
ENST00000367468
4
ENSE00000790909
chr1:
186647536-186647393
144
PGH2_HUMAN
105-153
49
1
A:105-153
49
1.5a
ENST00000367468
5a
ENSE00000790908
chr1:
186646962-186646781
182
PGH2_HUMAN
153-213
61
1
A:153-213
61
1.6
ENST00000367468
6
ENSE00000790907
chr1:
186646048-186645965
84
PGH2_HUMAN
214-241
28
1
A:214-241
28
1.7a
ENST00000367468
7a
ENSE00000790906
chr1:
186645845-186645599
247
PGH2_HUMAN
242-324
83
1
A:242-324
83
1.7c
ENST00000367468
7c
ENSE00000790905
chr1:
186645316-186645030
287
PGH2_HUMAN
324-419
96
1
A:324-419
96
1.8b
ENST00000367468
8b
ENSE00000790904
chr1:
186644528-186644381
148
PGH2_HUMAN
420-469
50
1
A:420-469
50
1.9b
ENST00000367468
9b
ENSE00001859883
chr1:
186643894-186640923
2972
PGH2_HUMAN
469-604
136
1
A:469-604
136
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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