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1UYP
Biol. Unit 3
Info
Asym.Unit (468 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (82 KB)
Biol.Unit 5 (82 KB)
Biol.Unit 6 (83 KB)
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(1)
Title
:
THE THREE-DIMENSIONAL STRUCTURE OF BETA-FRUCTOSIDASE (INVERTASE) FROM THERMOTOGA MARITIMA
Authors
:
F. Alberto, C. Bignon, G. Sulzenbacher, B. Henrissat, M. Czjzek
Date
:
02 Mar 04 (Deposition) - 22 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Invertase, Glycosyl Hydrolase Family 32, Sucrose Degradation, Beta-Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Alberto, C. Bignon, G. Sulzenbacher, B. Henrissat, M. Czjzek
The Three-Dimensional Structure Of Invertase ({Beta}-Fructosidase) From Thermotoga Maritima Reveals A Bimodular Arrangement And An Evolutionary Relationship Between Retaining And Inverting Glycosidases
J. Biol. Chem. V. 279 18903 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SODIUM ION (NAa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
-1
Ligand/Ion
CITRIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ARG B:360 , HOH B:2312 , TYR C:266 , PRO C:267 , THR C:268 , LYS C:269 , ARG C:270
BINDING SITE FOR RESIDUE SO4 B1433
2
AC9
SOFTWARE
TYR C:28 , THR C:248 , ASP C:249 , ARG C:250
BINDING SITE FOR RESIDUE SO4 C1433
3
BC1
SOFTWARE
ARG C:37 , LYS C:38 , HOH C:2029 , HOH C:2297
BINDING SITE FOR RESIDUE SO4 C1434
4
BC2
SOFTWARE
GLU C:101 , GLU C:103 , HIS C:134 , ALA C:135 , ARG C:137
BINDING SITE FOR RESIDUE SO4 C1435
5
CC1
SOFTWARE
ASN C:16 , GLN C:33 , TRP C:41 , PHE C:74 , SER C:75 , ARG C:137 , HOH C:2298
BINDING SITE FOR RESIDUE GOL C1436
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F32 (C:7-20)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F32
PS00609
Glycosyl hydrolases family 32 active site.
BFRA_THEMA
7-20
1
-
-
C:7-20
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1uypa2 (A:1-294)
1b: SCOP_d1uypb2 (B:1-294)
1c: SCOP_d1uypc2 (C:1-294)
1d: SCOP_d1uypd2 (D:1-294)
1e: SCOP_d1uype2 (E:1-294)
1f: SCOP_d1uypf2 (F:1-294)
2a: SCOP_d1uypa1 (A:295-432)
2b: SCOP_d1uypb1 (B:295-432)
2c: SCOP_d1uypc1 (C:295-432)
2d: SCOP_d1uypd1 (D:295-432)
2e: SCOP_d1uype1 (E:295-432)
2f: SCOP_d1uypf1 (F:295-432)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Arabinanase/levansucrase/invertase
(37)
Family
:
Glycosyl hydrolases family 32 N-terminal domain
(5)
Protein domain
:
Beta-fructosidase (invertase), N-terminal domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1uypa2
A:1-294
1b
d1uypb2
B:1-294
1c
d1uypc2
C:1-294
1d
d1uypd2
D:1-294
1e
d1uype2
E:1-294
1f
d1uypf2
F:1-294
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 32 C-terminal domain
(4)
Protein domain
:
Beta-fructosidase (invertase), C-terminal domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1uypa1
A:295-432
2b
d1uypb1
B:295-432
2c
d1uypc1
C:295-432
2d
d1uypd1
D:295-432
2e
d1uype1
E:295-432
2f
d1uypf1
F:295-432
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_32N_1uypF01 (F:7-294)
1b: PFAM_Glyco_hydro_32N_1uypF02 (F:7-294)
1c: PFAM_Glyco_hydro_32N_1uypF03 (F:7-294)
1d: PFAM_Glyco_hydro_32N_1uypF04 (F:7-294)
1e: PFAM_Glyco_hydro_32N_1uypF05 (F:7-294)
1f: PFAM_Glyco_hydro_32N_1uypF06 (F:7-294)
2a: PFAM_Glyco_hydro_32C_1uypF07 (F:317-397)
2b: PFAM_Glyco_hydro_32C_1uypF08 (F:317-397)
2c: PFAM_Glyco_hydro_32C_1uypF09 (F:317-397)
2d: PFAM_Glyco_hydro_32C_1uypF10 (F:317-397)
2e: PFAM_Glyco_hydro_32C_1uypF11 (F:317-397)
2f: PFAM_Glyco_hydro_32C_1uypF12 (F:317-397)
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(
)
(
)
Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_32N
(13)
Thermotoga maritima
(2)
1a
Glyco_hydro_32N-1uypF01
F:7-294
1b
Glyco_hydro_32N-1uypF02
F:7-294
1c
Glyco_hydro_32N-1uypF03
F:7-294
1d
Glyco_hydro_32N-1uypF04
F:7-294
1e
Glyco_hydro_32N-1uypF05
F:7-294
1f
Glyco_hydro_32N-1uypF06
F:7-294
Clan
:
no clan defined [family: Glyco_hydro_32C]
(13)
Family
:
Glyco_hydro_32C
(13)
Thermotoga maritima
(2)
2a
Glyco_hydro_32C-1uypF07
F:317-397
2b
Glyco_hydro_32C-1uypF08
F:317-397
2c
Glyco_hydro_32C-1uypF09
F:317-397
2d
Glyco_hydro_32C-1uypF10
F:317-397
2e
Glyco_hydro_32C-1uypF11
F:317-397
2f
Glyco_hydro_32C-1uypF12
F:317-397
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Asymmetric Unit 1
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Asym.Unit (468 KB)
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Biol.Unit 3 (83 KB)
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Biol.Unit 4 (82 KB)
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