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1UYP
Asym. Unit
Info
Asym.Unit (468 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (82 KB)
Biol.Unit 5 (82 KB)
Biol.Unit 6 (83 KB)
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(1)
Title
:
THE THREE-DIMENSIONAL STRUCTURE OF BETA-FRUCTOSIDASE (INVERTASE) FROM THERMOTOGA MARITIMA
Authors
:
F. Alberto, C. Bignon, G. Sulzenbacher, B. Henrissat, M. Czjzek
Date
:
02 Mar 04 (Deposition) - 22 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Invertase, Glycosyl Hydrolase Family 32, Sucrose Degradation, Beta-Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Alberto, C. Bignon, G. Sulzenbacher, B. Henrissat, M. Czjzek
The Three-Dimensional Structure Of Invertase ({Beta}-Fructosidase) From Thermotoga Maritima Reveals A Bimodular Arrangement And An Evolutionary Relationship Between Retaining And Inverting Glycosidases
J. Biol. Chem. V. 279 18903 2004
[
close entry info
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Hetero Components
(4, 22)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SODIUM ION (NAa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
GOL
6
Ligand/Ion
GLYCEROL
3
NA
1
Ligand/Ion
SODIUM ION
4
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:41 , GLY A:42 , ASN A:43 , ILE A:44 , HIS A:71 , ASP A:94
BINDING SITE FOR RESIDUE SO4 A1433
02
AC2
SOFTWARE
TYR A:28 , THR A:248 , ASP A:249 , ARG A:250 , ASP D:249
BINDING SITE FOR RESIDUE SO4 A1434
03
AC3
SOFTWARE
LEU A:265
BINDING SITE FOR RESIDUE SO4 A1435
04
AC4
SOFTWARE
MET A:109 , CIT A:1436 , HOH A:2012
BINDING SITE FOR RESIDUE NA A1438
05
AC5
SOFTWARE
ARG B:360 , HOH B:2312 , TYR C:266 , PRO C:267 , THR C:268 , LYS C:269 , ARG C:270
BINDING SITE FOR RESIDUE SO4 B1433
06
AC6
SOFTWARE
ARG B:93 , LYS B:99 , LYS B:102
BINDING SITE FOR RESIDUE SO4 B1434
07
AC7
SOFTWARE
GLU B:101 , GLU B:103 , HIS B:134 , ALA B:135 , ARG B:137 , GLU B:188
BINDING SITE FOR RESIDUE SO4 B1435
08
AC8
SOFTWARE
TYR B:28 , THR B:248 , ASP B:249 , ARG B:250
BINDING SITE FOR RESIDUE SO4 B1437
09
AC9
SOFTWARE
TYR C:28 , THR C:248 , ASP C:249 , ARG C:250
BINDING SITE FOR RESIDUE SO4 C1433
10
BC1
SOFTWARE
ARG C:37 , LYS C:38 , HOH C:2029 , HOH C:2297
BINDING SITE FOR RESIDUE SO4 C1434
11
BC2
SOFTWARE
GLU C:101 , GLU C:103 , HIS C:134 , ALA C:135 , ARG C:137
BINDING SITE FOR RESIDUE SO4 C1435
12
BC3
SOFTWARE
TYR E:28 , THR E:248 , ASP E:249 , ARG E:250
BINDING SITE FOR RESIDUE SO4 E1433
13
BC4
SOFTWARE
LEU F:1 , ARG F:270 , GLU F:271
BINDING SITE FOR RESIDUE SO4 F1433
14
BC5
SOFTWARE
TYR F:266 , PRO F:267 , LYS F:269 , ARG F:270 , HOH F:2277
BINDING SITE FOR RESIDUE SO4 F1434
15
BC6
SOFTWARE
TYR F:28 , THR F:248 , ASP F:249 , ARG F:250
BINDING SITE FOR RESIDUE SO4 F1435
16
BC7
SOFTWARE
VAL A:117 , LYS A:118 , TYR A:119 , ASP A:120 , NA A:1438 , HOH A:2289
BINDING SITE FOR RESIDUE CIT A1436
17
BC8
SOFTWARE
ASN A:16 , ASP A:17 , GLN A:33 , TRP A:41 , PHE A:74 , SER A:75 , ARG A:137 , ASP A:138 , HOH A:2014
BINDING SITE FOR RESIDUE GOL A1437
18
BC9
SOFTWARE
ASN B:16 , ASP B:17 , GLN B:33 , TRP B:41 , PHE B:74 , SER B:75 , ASP B:138
BINDING SITE FOR RESIDUE GOL B1436
19
CC1
SOFTWARE
ASN C:16 , GLN C:33 , TRP C:41 , PHE C:74 , SER C:75 , ARG C:137 , HOH C:2298
BINDING SITE FOR RESIDUE GOL C1436
20
CC2
SOFTWARE
ASN D:16 , ASP D:17 , GLN D:33 , TRP D:41 , PHE D:74 , SER D:75 , ASP D:138
BINDING SITE FOR RESIDUE GOL D1433
21
CC3
SOFTWARE
ASN E:16 , ASP E:17 , GLN E:33 , TRP E:41 , PHE E:74 , SER E:75 , ARG E:137 , ASP E:138
BINDING SITE FOR RESIDUE GOL E1434
22
CC4
SOFTWARE
ASN F:16 , ASP F:17 , GLN F:33 , TRP F:41 , PHE F:74 , SER F:75 , ASP F:138
BINDING SITE FOR RESIDUE GOL F1436
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F32 (A:7-20,B:7-20,C:7-20,D:7-20,E:7-20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F32
PS00609
Glycosyl hydrolases family 32 active site.
BFRA_THEMA
7-20
6
A:7-20
B:7-20
C:7-20
D:7-20
E:7-20
F:7-20
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1uypa2 (A:1-294)
1b: SCOP_d1uypb2 (B:1-294)
1c: SCOP_d1uypc2 (C:1-294)
1d: SCOP_d1uypd2 (D:1-294)
1e: SCOP_d1uype2 (E:1-294)
1f: SCOP_d1uypf2 (F:1-294)
2a: SCOP_d1uypa1 (A:295-432)
2b: SCOP_d1uypb1 (B:295-432)
2c: SCOP_d1uypc1 (C:295-432)
2d: SCOP_d1uypd1 (D:295-432)
2e: SCOP_d1uype1 (E:295-432)
2f: SCOP_d1uypf1 (F:295-432)
View:
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(
)
(
)
Folds
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)
(
)
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Arabinanase/levansucrase/invertase
(37)
Family
:
Glycosyl hydrolases family 32 N-terminal domain
(5)
Protein domain
:
Beta-fructosidase (invertase), N-terminal domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1uypa2
A:1-294
1b
d1uypb2
B:1-294
1c
d1uypc2
C:1-294
1d
d1uypd2
D:1-294
1e
d1uype2
E:1-294
1f
d1uypf2
F:1-294
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 32 C-terminal domain
(4)
Protein domain
:
Beta-fructosidase (invertase), C-terminal domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1uypa1
A:295-432
2b
d1uypb1
B:295-432
2c
d1uypc1
C:295-432
2d
d1uypd1
D:295-432
2e
d1uype1
E:295-432
2f
d1uypf1
F:295-432
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_32N_1uypF01 (F:7-294)
1b: PFAM_Glyco_hydro_32N_1uypF02 (F:7-294)
1c: PFAM_Glyco_hydro_32N_1uypF03 (F:7-294)
1d: PFAM_Glyco_hydro_32N_1uypF04 (F:7-294)
1e: PFAM_Glyco_hydro_32N_1uypF05 (F:7-294)
1f: PFAM_Glyco_hydro_32N_1uypF06 (F:7-294)
2a: PFAM_Glyco_hydro_32C_1uypF07 (F:317-397)
2b: PFAM_Glyco_hydro_32C_1uypF08 (F:317-397)
2c: PFAM_Glyco_hydro_32C_1uypF09 (F:317-397)
2d: PFAM_Glyco_hydro_32C_1uypF10 (F:317-397)
2e: PFAM_Glyco_hydro_32C_1uypF11 (F:317-397)
2f: PFAM_Glyco_hydro_32C_1uypF12 (F:317-397)
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_32N
(13)
Thermotoga maritima
(2)
1a
Glyco_hydro_32N-1uypF01
F:7-294
1b
Glyco_hydro_32N-1uypF02
F:7-294
1c
Glyco_hydro_32N-1uypF03
F:7-294
1d
Glyco_hydro_32N-1uypF04
F:7-294
1e
Glyco_hydro_32N-1uypF05
F:7-294
1f
Glyco_hydro_32N-1uypF06
F:7-294
Clan
:
no clan defined [family: Glyco_hydro_32C]
(13)
Family
:
Glyco_hydro_32C
(13)
Thermotoga maritima
(2)
2a
Glyco_hydro_32C-1uypF07
F:317-397
2b
Glyco_hydro_32C-1uypF08
F:317-397
2c
Glyco_hydro_32C-1uypF09
F:317-397
2d
Glyco_hydro_32C-1uypF10
F:317-397
2e
Glyco_hydro_32C-1uypF11
F:317-397
2f
Glyco_hydro_32C-1uypF12
F:317-397
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Asym.Unit (468 KB)
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