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1UVQ
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HLA-DQ0602 IN COMPLEX WITH A HYPOCRETIN PEPTIDE
Authors
:
C. Siebold, B. E. Hansen, J. R. Wyer, K. Harlos, R. E. Esnouf, A. Svejgaard, J. I. Bell, J. L. Strominger, E. Y. Jones, L. Fugger
Date
:
22 Jan 04 (Deposition) - 05 Feb 04 (Release) - 21 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Immunology, Mhc Class Ii, Diabetes, Narcolepsy, Autoimmune Disease, Structural Proteomics In Europe, Spine, Structural Genomics, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Siebold, B. E. Hansen, J. R. Wyer, K. Harlos, R. E. Esnouf, A. Svejgaard, J. I. Bell, J. L. Strominger, E. Y. Jones, L. Fugger
Crystal Structure Of Hla-Dq0602 That Protects Against Type 1 Diabetes And Confers Strong Susceptibility To Narcolepsy
Proc. Natl. Acad. Sci. Usa V. 101 1999 2004
[
close entry info
]
Hetero Components
(6, 9)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: BETA-D-MANNOSE (BMAa)
3a: ALPHA-L-FUCOSE (FUCa)
4a: GLYCINE (GLYa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GLY
1
Mod. Amino Acid
GLYCINE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:165 , HIS A:180 , ASP B:76 , HIS B:81
BINDING SITE FOR RESIDUE ZN B1192
2
AC2
SOFTWARE
ASP A:113 , LYS A:143 , PHE A:149 , HOH A:2189 , HOH B:2137
BINDING SITE FOR RESIDUE GLY A1186
3
AC3
SOFTWARE
TYR A:80 , THR A:83 , ASN B:33 , GLU B:35 , HOH B:2168
BINDING SITE FOR RESIDUE ACY B1197
4
AC4
SOFTWARE
ARG A:79 , ASN A:81
BINDING SITE FOR MONO-SACCHARIDE NAG A1185 BOUND TO ASN A 81
5
AC5
SOFTWARE
ASN A:121 , GLU A:169 , TRP A:171 , HOH A:2186 , HOH A:2187 , HOH A:2188
BINDING SITE FOR MONO-SACCHARIDE NAG A1184 BOUND TO ASN A 121
6
AC6
SOFTWARE
LEU A:125 , GLY A:128 , GLN A:129 , SER A:130 , ASN B:19 , THR B:21 , GLU B:22 , HOH B:2003 , HOH B:2164 , HOH B:2165 , HOH B:2167
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1193 THROUGH BMA B1196 BOUND TO ASN B 19
[
close Site info
]
SAPs(SNPs)/Variants
(123, 123)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_050382 (D2G, chain A, )
002: VAR_062688 (S3P, chain B, )
003: VAR_062689 (F9F, chain B, )
004: VAR_062690 (F9L, chain B, )
005: VAR_060494 (C11C, chain A, )
006: VAR_062691 (F11L, chain B, )
007: VAR_061472 (G13G, chain B, )
008: VAR_061473 (M14L, chain B, )
009: VAR_033401 (F18F, chain A, )
010: VAR_060495 (P21L, chain A, )
011: VAR_062692 (R23L, chain B, )
012: VAR_033402 (Y25F, chain A, )
013: VAR_062693 (L26G, chain B, )
014: VAR_062694 (L26L, chain B, )
015: VAR_033403 (T26S, chain A, )
016: VAR_062695 (V27L, chain B, )
017: VAR_062696 (T28S, chain B, )
018: VAR_062697 (Y30H, chain B, )
019: VAR_062698 (Y30S, chain B, )
020: VAR_014604 (Q34E, chain A, )
021: VAR_062699 (Y37D, chain B, )
022: VAR_062700 (Y37I, chain B, )
023: VAR_062701 (A38T, chain B, )
024: VAR_062702 (A38V, chain B, )
025: VAR_060496 (E40E, chain A, )
026: VAR_050383 (R41K, chain A, )
027: VAR_060497 (T44A, chain A, )
028: VAR_060498 (A45A, chain A, )
029: VAR_062703 (G45G, chain B, )
030: VAR_062704 (V46E, chain B, )
031: VAR_062705 (Y47F, chain B, )
032: VAR_060499 (R47K, chain A, )
033: VAR_060500 (R47Q, chain A, )
034: VAR_060501 (R47R, chain A, )
035: VAR_033404 (R47Y, chain A, )
036: VAR_060502 (W48W, chain A, )
037: VAR_062706 (A49V, chain B, )
038: VAR_033406 (E50D, chain A, )
039: VAR_060503 (E50E, chain A, )
040: VAR_033405 (E50L, chain A, )
041: VAR_060504 (F51F, chain A, )
042: VAR_060505 (S52H, chain A, )
043: VAR_062707 (P52L, chain B, )
044: VAR_060506 (S52S, chain A, )
045: VAR_060507 (K53K, chain A, )
046: VAR_062708 (Q53Q, chain B, )
047: VAR_060508 (K53R, chain A, )
048: VAR_060509 (F54L, chain A, )
049: VAR_062709 (R55L, chain B, )
050: VAR_062710 (R55Q, chain B, )
051: VAR_062711 (R55R, chain B, )
052: VAR_033407 (G55S, chain A, )
053: VAR_062712 (P56L, chain B, )
054: VAR_062713 (D57A, chain B, )
055: VAR_062714 (D57S, chain B, )
056: VAR_062715 (D57V, chain B, )
057: VAR_060512 (P59R, chain A, )
058: VAR_062716 (Y60N, chain B, )
059: VAR_060513 (G61G, chain A, )
060: VAR_062717 (N62K, chain B, )
061: VAR_062718 (S63R, chain B, )
062: VAR_033408 (R64R, chain A, )
063: VAR_062719 (E66D, chain B, )
064: VAR_033409 (M66M, chain A, )
065: VAR_062720 (V67D, chain B, )
066: VAR_062721 (V67I, chain B, )
067: VAR_060514 (A69A, chain A, )
068: VAR_060515 (A69T, chain A, )
069: VAR_033410 (A69V, chain A, )
070: VAR_062722 (G70E, chain B, )
071: VAR_062723 (G70G, chain B, )
072: VAR_062724 (T71A, chain B, )
073: VAR_062725 (T71D, chain B, )
074: VAR_062726 (T71K, chain B, )
075: VAR_062727 (E74A, chain B, )
076: VAR_062728 (E74S, chain B, )
077: VAR_060516 (I75I, chain A, )
078: VAR_062729 (L75V, chain B, )
079: VAR_060517 (M76M, chain A, )
080: VAR_060518 (M76V, chain A, )
081: VAR_062730 (T77R, chain B, )
082: VAR_060519 (R79C, chain A, )
083: VAR_050384 (Y80Y, chain A, )
084: VAR_062731 (E84E, chain B, )
085: VAR_062732 (V85V, chain B, )
086: VAR_062733 (A86A, chain B, )
087: VAR_062734 (A86G, chain B, )
088: VAR_062735 (F87F, chain B, )
089: VAR_062736 (F87Y, chain B, )
090: VAR_062737 (G89G, chain B, )
091: VAR_062738 (I90I, chain B, )
092: VAR_060520 (L102V, chain A, )
093: VAR_050385 (T107T, chain A, )
094: VAR_056571 (V116I, chain B, )
095: VAR_062739 (G125G, chain B, )
096: VAR_062740 (G125S, chain B, )
097: VAR_062741 (Q126H, chain B, )
098: VAR_050386 (Q129Q, chain A, )
099: VAR_060521 (S130A, chain A, )
100: VAR_062742 (R130Q, chain B, )
101: VAR_062744 (R133Q, chain B, )
102: VAR_062743 (R133W, chain B, )
103: VAR_062745 (D135G, chain B, )
104: VAR_062746 (Q136E, chain B, )
105: VAR_060522 (T138I, chain A, )
106: VAR_060524 (S139I, chain A, )
107: VAR_060523 (S139R, chain A, )
108: VAR_062747 (A140A, chain B, )
109: VAR_060525 (Y153H, chain A, )
110: VAR_060526 (F156F, chain A, )
111: VAR_060527 (A160D, chain A, )
112: VAR_060528 (A160S, chain A, )
113: VAR_060529 (D161D, chain A, )
114: VAR_056572 (E162D, chain B, )
115: VAR_060530 (I163I, chain A, )
116: VAR_059522 (P165L, chain B, )
117: VAR_062748 (R167R, chain B, )
118: VAR_062750 (V170I, chain B, )
119: VAR_060531 (Q175E, chain A, )
120: VAR_060532 (Q175Q, chain A, )
121: VAR_062751 (S182S, chain B, )
122: VAR_062752 (T185I, chain B, )
123: VAR_062753 (V186A, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_050382
D
25
G
DQA1_HUMAN
Polymorphism
12722042
A
D
2
G
002
UniProt
VAR_062688
S
35
P
DQB1_HUMAN
Polymorphism
---
B
S
3
P
003
UniProt
VAR_062689
Y
41
F
DQB1_HUMAN
Polymorphism
9274407
B
F
9
F
004
UniProt
VAR_062690
Y
41
L
DQB1_HUMAN
Polymorphism
---
B
F
9
L
005
UniProt
VAR_060494
Y
34
C
DQA1_HUMAN
Polymorphism
1129740
A
C
11
C
006
UniProt
VAR_062691
F
43
L
DQB1_HUMAN
Polymorphism
56173496
B
F
11
L
007
UniProt
VAR_061472
A
45
G
DQB1_HUMAN
Polymorphism
1130375
B
G
13
G
008
UniProt
VAR_061473
M
46
L
DQB1_HUMAN
Polymorphism
1130368
B
M
14
L
009
UniProt
VAR_033401
S
41
F
DQA1_HUMAN
Polymorphism
1071630
A
F
18
F
010
UniProt
VAR_060495
P
44
L
DQA1_HUMAN
Polymorphism
41549715
A
P
21
L
011
UniProt
VAR_062692
R
55
L
DQB1_HUMAN
Polymorphism
41540813
B
R
23
L
012
UniProt
VAR_033402
Y
48
F
DQA1_HUMAN
Polymorphism
12722051
A
Y
25
F
013
UniProt
VAR_062693
Y
58
G
DQB1_HUMAN
Polymorphism
---
B
L
26
G
014
UniProt
VAR_062694
Y
58
L
DQB1_HUMAN
Polymorphism
---
B
L
26
L
015
UniProt
VAR_033403
T
49
S
DQA1_HUMAN
Polymorphism
3188011
A
T
26
S
016
UniProt
VAR_062695
V
59
L
DQB1_HUMAN
Polymorphism
41563539
B
V
27
L
017
UniProt
VAR_062696
T
60
S
DQB1_HUMAN
Polymorphism
9274405
B
T
28
S
018
UniProt
VAR_062697
Y
62
H
DQB1_HUMAN
Polymorphism
---
B
Y
30
H
019
UniProt
VAR_062698
Y
62
S
DQB1_HUMAN
Polymorphism
---
B
Y
30
S
020
UniProt
VAR_014604
Q
57
E
DQA1_HUMAN
Polymorphism
10093
A
Q
34
E
021
UniProt
VAR_062699
Y
69
D
DQB1_HUMAN
Polymorphism
1130370
B
Y
37
D
022
UniProt
VAR_062700
Y
69
I
DQB1_HUMAN
Polymorphism
---
B
Y
37
I
023
UniProt
VAR_062701
A
70
T
DQB1_HUMAN
Polymorphism
45519640
B
A
38
T
024
UniProt
VAR_062702
A
70
V
DQB1_HUMAN
Polymorphism
1063318
B
A
38
V
025
UniProt
VAR_060496
G
63
E
DQA1_HUMAN
Polymorphism
1142323
A
E
40
E
026
UniProt
VAR_050383
R
64
K
DQA1_HUMAN
Polymorphism
36219699
A
R
41
K
027
UniProt
VAR_060497
T
67
A
DQA1_HUMAN
Polymorphism
41543221
A
T
44
A
028
UniProt
VAR_060498
V
68
A
DQA1_HUMAN
Polymorphism
1142324
A
A
45
A
029
UniProt
VAR_062703
E
77
G
DQB1_HUMAN
Polymorphism
1049083
B
G
45
G
030
UniProt
VAR_062704
V
78
E
DQB1_HUMAN
Polymorphism
9274398
B
V
46
E
031
UniProt
VAR_062705
Y
79
F
DQB1_HUMAN
Polymorphism
9274397
B
Y
47
F
032
UniProt
VAR_060499
C
70
K
DQA1_HUMAN
Polymorphism
---
A
R
47
K
033
UniProt
VAR_060500
C
70
Q
DQA1_HUMAN
Polymorphism
---
A
R
47
Q
034
UniProt
VAR_060501
C
70
R
DQA1_HUMAN
Polymorphism
---
A
R
47
R
035
UniProt
VAR_033404
C
70
Y
DQA1_HUMAN
Polymorphism
3207983
A
R
47
Y
036
UniProt
VAR_060502
L
71
W
DQA1_HUMAN
Polymorphism
1142328
A
W
48
W
037
UniProt
VAR_062706
A
81
V
DQB1_HUMAN
Polymorphism
41558214
B
A
49
V
038
UniProt
VAR_033406
V
73
D
DQA1_HUMAN
Polymorphism
---
A
E
50
D
039
UniProt
VAR_060503
V
73
E
DQA1_HUMAN
Polymorphism
3208105
A
E
50
E
040
UniProt
VAR_033405
V
73
L
DQA1_HUMAN
Polymorphism
---
A
E
50
L
041
UniProt
VAR_060504
L
74
F
DQA1_HUMAN
Polymorphism
9272698
A
F
51
F
042
UniProt
VAR_060505
R
75
H
DQA1_HUMAN
Polymorphism
---
A
S
52
H
043
UniProt
VAR_062707
P
84
L
DQB1_HUMAN
Polymorphism
9274395
B
P
52
L
044
UniProt
VAR_060506
R
75
S
DQA1_HUMAN
Polymorphism
9272699
A
S
52
S
045
UniProt
VAR_060507
Q
76
K
DQA1_HUMAN
Polymorphism
1048052
A
K
53
K
046
UniProt
VAR_062708
L
85
Q
DQB1_HUMAN
Polymorphism
1140313
B
Q
53
Q
047
UniProt
VAR_060508
Q
76
R
DQA1_HUMAN
Polymorphism
---
A
K
53
R
048
UniProt
VAR_060509
F
77
L
DQA1_HUMAN
Polymorphism
3188043
A
F
54
L
049
UniProt
VAR_062709
P
87
L
DQB1_HUMAN
Polymorphism
---
B
R
55
L
050
UniProt
VAR_062710
P
87
Q
DQB1_HUMAN
Polymorphism
---
B
R
55
Q
051
UniProt
VAR_062711
P
87
R
DQB1_HUMAN
Polymorphism
1130380
B
R
55
R
052
UniProt
VAR_033407
R
78
S
DQA1_HUMAN
Polymorphism
36219345
A
G
55
S
053
UniProt
VAR_062712
P
88
L
DQB1_HUMAN
Polymorphism
1130381
B
P
56
L
054
UniProt
VAR_062713
D
89
A
DQB1_HUMAN
Polymorphism
1071637
B
D
57
A
055
UniProt
VAR_062714
D
89
S
DQB1_HUMAN
Polymorphism
---
B
D
57
S
056
UniProt
VAR_062715
D
89
V
DQB1_HUMAN
Polymorphism
---
B
D
57
V
057
UniProt
VAR_060512
P
81
R
DQA1_HUMAN
Polymorphism
41541412
A
P
59
R
058
UniProt
VAR_062716
Y
92
N
DQB1_HUMAN
Polymorphism
---
B
Y
60
N
059
UniProt
VAR_060513
F
83
G
DQA1_HUMAN
Polymorphism
---
A
G
61
G
060
UniProt
VAR_062717
N
94
K
DQB1_HUMAN
Polymorphism
---
B
N
62
K
061
UniProt
VAR_062718
S
95
R
DQB1_HUMAN
Polymorphism
---
B
S
63
R
062
UniProt
VAR_033408
T
86
R
DQA1_HUMAN
Polymorphism
1048073
A
R
64
R
063
UniProt
VAR_062719
E
98
D
DQB1_HUMAN
Polymorphism
9274390
B
E
66
D
064
UniProt
VAR_033409
I
88
M
DQA1_HUMAN
Polymorphism
1048080
A
M
66
M
065
UniProt
VAR_062720
V
99
D
DQB1_HUMAN
Polymorphism
---
B
V
67
D
066
UniProt
VAR_062721
V
99
I
DQB1_HUMAN
Polymorphism
---
B
V
67
I
067
UniProt
VAR_060514
L
91
A
DQA1_HUMAN
Polymorphism
---
A
A
69
A
068
UniProt
VAR_060515
L
91
T
DQA1_HUMAN
Polymorphism
---
A
A
69
T
069
UniProt
VAR_033410
L
91
V
DQA1_HUMAN
Polymorphism
1048085
A
A
69
V
070
UniProt
VAR_062722
R
102
E
DQB1_HUMAN
Polymorphism
---
B
G
70
E
071
UniProt
VAR_062723
R
102
G
DQB1_HUMAN
Polymorphism
1130386
B
G
70
G
072
UniProt
VAR_062724
T
103
A
DQB1_HUMAN
Polymorphism
---
B
T
71
A
073
UniProt
VAR_062725
T
103
D
DQB1_HUMAN
Polymorphism
---
B
T
71
D
074
UniProt
VAR_062726
T
103
K
DQB1_HUMAN
Polymorphism
---
B
T
71
K
075
UniProt
VAR_062727
E
106
A
DQB1_HUMAN
Polymorphism
1130387
B
E
74
A
076
UniProt
VAR_062728
E
106
S
DQB1_HUMAN
Polymorphism
---
B
E
74
S
077
UniProt
VAR_060516
S
97
I
DQA1_HUMAN
Polymorphism
---
A
I
75
I
078
UniProt
VAR_062729
L
107
V
DQB1_HUMAN
Polymorphism
9274384
B
L
75
V
079
UniProt
VAR_060517
L
98
M
DQA1_HUMAN
Polymorphism
---
A
M
76
M
080
UniProt
VAR_060518
L
98
V
DQA1_HUMAN
Polymorphism
---
A
M
76
V
081
UniProt
VAR_062730
T
109
R
DQB1_HUMAN
Polymorphism
1130392
B
T
77
R
082
UniProt
VAR_060519
R
101
C
DQA1_HUMAN
Polymorphism
---
A
R
79
C
083
UniProt
VAR_050384
S
102
Y
DQA1_HUMAN
Polymorphism
1129808
A
Y
80
Y
084
UniProt
VAR_062731
Q
116
E
DQB1_HUMAN
Polymorphism
1140316
B
E
84
E
085
UniProt
VAR_062732
L
117
V
DQB1_HUMAN
Polymorphism
1140317
B
V
85
V
086
UniProt
VAR_062733
E
118
A
DQB1_HUMAN
Polymorphism
---
B
A
86
A
087
UniProt
VAR_062734
E
118
G
DQB1_HUMAN
Polymorphism
---
B
A
86
G
088
UniProt
VAR_062735
L
119
F
DQB1_HUMAN
Polymorphism
9274379
B
F
87
F
089
UniProt
VAR_062736
L
119
Y
DQB1_HUMAN
Polymorphism
---
B
F
87
Y
090
UniProt
VAR_062737
T
121
G
DQB1_HUMAN
Polymorphism
---
B
G
89
G
091
UniProt
VAR_062738
T
122
I
DQB1_HUMAN
Polymorphism
1140320
B
I
90
I
092
UniProt
VAR_060520
L
124
V
DQA1_HUMAN
Polymorphism
---
A
L
102
V
093
UniProt
VAR_050385
I
129
T
DQA1_HUMAN
Polymorphism
707952
A
T
107
T
094
UniProt
VAR_056571
V
148
I
DQB1_HUMAN
Polymorphism
1049100
B
V
116
I
095
UniProt
VAR_062739
A
157
G
DQB1_HUMAN
Polymorphism
---
B
G
125
G
096
UniProt
VAR_062740
A
157
S
DQB1_HUMAN
Polymorphism
---
B
G
125
S
097
UniProt
VAR_062741
Q
158
H
DQB1_HUMAN
Polymorphism
---
B
Q
126
H
098
UniProt
VAR_050386
H
151
Q
DQA1_HUMAN
Polymorphism
707950
A
Q
129
Q
099
UniProt
VAR_060521
S
152
A
DQA1_HUMAN
Polymorphism
---
A
S
130
A
100
UniProt
VAR_062742
R
162
Q
DQB1_HUMAN
Polymorphism
---
B
R
130
Q
101
UniProt
VAR_062744
R
165
Q
DQB1_HUMAN
Polymorphism
---
B
R
133
Q
102
UniProt
VAR_062743
R
165
W
DQB1_HUMAN
Polymorphism
---
B
R
133
W
103
UniProt
VAR_062745
D
167
G
DQB1_HUMAN
Polymorphism
---
B
D
135
G
104
UniProt
VAR_062746
Q
168
E
DQB1_HUMAN
Polymorphism
---
B
Q
136
E
105
UniProt
VAR_060522
T
160
I
DQA1_HUMAN
Polymorphism
---
A
T
138
I
106
UniProt
VAR_060524
S
161
I
DQA1_HUMAN
Polymorphism
---
A
S
139
I
107
UniProt
VAR_060523
S
161
R
DQA1_HUMAN
Polymorphism
---
A
S
139
R
108
UniProt
VAR_062747
T
172
A
DQB1_HUMAN
Polymorphism
1063323
B
A
140
A
109
UniProt
VAR_060525
Y
175
H
DQA1_HUMAN
Polymorphism
---
A
Y
153
H
110
UniProt
VAR_060526
L
178
F
DQA1_HUMAN
Polymorphism
707949
A
F
156
F
111
UniProt
VAR_060527
A
182
D
DQA1_HUMAN
Polymorphism
---
A
A
160
D
112
UniProt
VAR_060528
A
182
S
DQA1_HUMAN
Polymorphism
---
A
A
160
S
113
UniProt
VAR_060529
E
183
D
DQA1_HUMAN
Polymorphism
707963
A
D
161
D
114
UniProt
VAR_056572
E
194
D
DQB1_HUMAN
Polymorphism
9273952
B
E
162
D
115
UniProt
VAR_060530
S
185
I
DQA1_HUMAN
Polymorphism
---
A
I
163
I
116
UniProt
VAR_059522
P
197
L
DQB1_HUMAN
Polymorphism
9273948
B
P
165
L
117
UniProt
VAR_062748
H
199
R
DQB1_HUMAN
Polymorphism
---
B
R
167
R
118
UniProt
VAR_062750
V
202
I
DQB1_HUMAN
Polymorphism
---
B
V
170
I
119
UniProt
VAR_060531
K
197
E
DQA1_HUMAN
Polymorphism
---
A
Q
175
E
120
UniProt
VAR_060532
K
197
Q
DQA1_HUMAN
Polymorphism
---
A
Q
175
Q
121
UniProt
VAR_062751
N
214
S
DQB1_HUMAN
Polymorphism
---
B
S
182
S
122
UniProt
VAR_062752
T
217
I
DQB1_HUMAN
Polymorphism
---
B
T
185
I
123
UniProt
VAR_062753
V
218
A
DQB1_HUMAN
Polymorphism
---
B
V
186
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:164-170,B:171-177)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
DQA1_HUMAN
186-192
1
A:164-170
DQB1_HUMAN
203-209
1
B:171-177
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (C:1-7)
Exon 1.2 (C:8-20 (gaps))
Exon 2.8b (B:3-5)
Exon 2.9a (B:5-95)
Exon 2.9e (B:95-189 (gaps))
Exon 2.9g (B:189-191)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
4: Boundary -/2.8b
5: Boundary 2.8b/2.9a
6: Boundary 2.9a/2.9e
7: Boundary 2.9e/2.9g
8: Boundary 2.9g/2.12c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000293330
1
ENSE00001059071
chr17:
40337470-40337363
108
OREX_HUMAN
1-7
7
1
C:1-7
7
1.2
ENST00000293330
2
ENSE00001059073
chr17:
40336546-40336078
469
OREX_HUMAN
8-131
124
1
C:8-20 (gaps)
58
2.8b
ENST00000399088
8b
ENSE00001884719
HSCHR6_MHC_MCF:32665377-32665182
196
DQB1_HUMAN
1-37
37
1
B:3-5
3
2.9a
ENST00000399088
9a
ENSE00001624106
HSCHR6_MHC_MCF:32663733-32663464
270
DQB1_HUMAN
37-127
91
1
B:5-95
91
2.9e
ENST00000399088
9e
ENSE00001668171
HSCHR6_MHC_MCF:32660834-32660553
282
DQB1_HUMAN
127-221
95
1
B:95-189 (gaps)
95
2.9g
ENST00000399088
9g
ENSE00001605927
HSCHR6_MHC_MCF:32660035-32659925
111
DQB1_HUMAN
221-258
38
1
B:189-191
3
2.12c
ENST00000399088
12c
ENSE00001775646
HSCHR6_MHC_MCF:32658804-32658022
783
DQB1_HUMAN
258-261
4
0
-
-
[
close EXON info
]
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1uvqa1 (A:85-183)
2a: SCOP_d1uvqb1 (B:95-191)
3a: SCOP_d1uvqa2 (A:2-84)
4a: SCOP_d1uvqb2 (B:3-94)
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(
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(
)
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(
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Class II MHC alpha chain, C-terminal domain
(75)
Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
(3)
1a
d1uvqa1
A:85-183
Protein domain
:
Class II MHC beta chain, C-terminal domain
(70)
Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
(3)
2a
d1uvqb1
B:95-191
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class II MHC alpha chain, N-terminal domain
(75)
Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]
(1)
3a
d1uvqa2
A:2-84
Protein domain
:
Class II MHC beta chain, N-terminal domain
(70)
Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]
(1)
4a
d1uvqb2
B:3-94
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close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1uvqB01 (B:3-92)
1b: CATH_1uvqA01 (A:5-84)
2a: CATH_1uvqA02 (A:85-183)
2b: CATH_1uvqB02 (B:93-191)
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(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Homologous Superfamily
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Human (Homo sapiens)
(48)
1a
1uvqB01
B:3-92
1b
1uvqA01
A:5-84
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1uvqA02
A:85-183
2b
1uvqB02
B:93-191
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Pfam Domains
(0, 0)
Info
all PFAM domains
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