PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1USY
Asym. Unit
Info
Asym.Unit (327 KB)
Biol.Unit 1 (317 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ATP PHOSPHORIBOSYL TRANSFERASE (HISG:HISZ) COMPLEX FROM THERMOTOGA MARITIMA
Authors
:
M. C. Vega, F. J. Fernandez, G. E. Murphy, P. Zou, A. Popov, M. Wilmanns
Date
:
01 Dec 03 (Deposition) - 15 Dec 04 (Release) - 10 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.52
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Transferase, Atp Phosphoribosyl Transferase, Aminoacyl-Trna Synthetase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Vega, P. Zou, F. J. Fernandez, G. E. Murphy, R. Sterner, A. Popov, M. Wilmanns
Regulation Of The Hetero-Octameric Atp Phosphoribosyl Transferase Complex From Thermotoga Maritima By A Trna Synthetase-Like Subunit.
Mol. Microbiol. V. 55 675 2005
[
close entry info
]
Hetero Components
(2, 14)
Info
All Hetero Components
1a: HISTIDINE (HISa)
1b: HISTIDINE (HISb)
1c: HISTIDINE (HISc)
1d: HISTIDINE (HISd)
1e: HISTIDINE (HISe)
1f: HISTIDINE (HISf)
1g: HISTIDINE (HISg)
1h: HISTIDINE (HISh)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HIS
8
Mod. Amino Acid
HISTIDINE
2
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR E:149 , GLU E:150 , THR E:151 , GLY E:152 , ARG E:153 , THR E:154
BINDING SITE FOR RESIDUE PO4 E1202
02
AC2
SOFTWARE
LYS E:108 , GLY E:131 , SER E:132 , LYS F:8
BINDING SITE FOR RESIDUE PO4 E1203
03
AC3
SOFTWARE
GLU F:150 , THR F:151 , GLY F:152 , ARG F:153 , THR F:154
BINDING SITE FOR RESIDUE PO4 F1203
04
AC4
SOFTWARE
GLU G:150 , THR G:151 , GLY G:152 , ARG G:153 , THR G:154
BINDING SITE FOR RESIDUE PO4 G1204
05
AC5
SOFTWARE
LYS G:108 , GLY G:131 , SER G:132 , HOH G:2024 , ARG H:45
BINDING SITE FOR RESIDUE PO4 G1205
06
AC6
SOFTWARE
THR H:149 , GLU H:150 , THR H:151 , GLY H:152 , ARG H:153 , THR H:154
BINDING SITE FOR RESIDUE PO4 H1202
07
AC7
SOFTWARE
LYS C:157 , LEU C:159 , ILE C:184 , TYR C:185 , PRO G:78 , TYR G:180 , GLN G:195
BINDING SITE FOR RESIDUE HIS C1275
08
AC8
SOFTWARE
TYR D:185 , LEU F:191 , GLN F:195
BINDING SITE FOR RESIDUE HIS D1276
09
AC9
SOFTWARE
LYS B:157 , ILE B:184 , PRO E:78 , TYR E:180 , HOH E:2020
BINDING SITE FOR RESIDUE HIS E1204
10
BC1
SOFTWARE
GLU B:161 , THR E:65 , ARG E:170 , HIS E:172
BINDING SITE FOR RESIDUE HIS E1205
11
BC2
SOFTWARE
GLU D:161 , THR F:65 , LEU F:68 , GLN F:77 , ARG F:170 , HIS F:172
BINDING SITE FOR RESIDUE HIS F1204
12
BC3
SOFTWARE
ASN C:158 , THR G:65 , GLN G:77 , ARG G:170 , HIS G:172 , HOH G:2025 , HOH G:2026 , HOH G:2027
BINDING SITE FOR RESIDUE HIS G1206
13
BC4
SOFTWARE
ILE A:184 , TYR A:185 , ILE H:76 , PRO H:78 , TYR H:180 , LEU H:191 , GLN H:195
BINDING SITE FOR RESIDUE HIS H1203
14
BC5
SOFTWARE
GLU A:161 , HOH A:2023 , THR H:65 , GLN H:77 , ARG H:170 , HIS H:172
BINDING SITE FOR RESIDUE HIS H1204
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ATP_P_PHORIBOSYLTR (E:134-155,F:134-155,G:134-155,H:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATP_P_PHORIBOSYLTR
PS01316
ATP phosphoribosyltransferase signature.
HIS1_THEMA
134-155
4
E:134-155
F:134-155
G:134-155
H:134-155
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1usya_ (A:)
1b: SCOP_d1usyb_ (B:)
1c: SCOP_d1usyc_ (C:)
1d: SCOP_d1usyd_ (D:)
2a: SCOP_d1usye_ (E:)
2b: SCOP_d1usyf_ (F:)
2c: SCOP_d1usyg_ (G:)
2d: SCOP_d1usyh_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
ATP phosphoribosyltransferase regulatory subunit HisZ
(3)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1usya_
A:
1b
d1usyb_
B:
1c
d1usyc_
C:
1d
d1usyd_
D:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain
(10)
Thermotoga maritima [TaxId: 2336]
(3)
2a
d1usye_
E:
2b
d1usyf_
F:
2c
d1usyg_
G:
2d
d1usyh_
H:
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1usyA00 (A:1-275)
1b: CATH_1usyB00 (B:1-275)
1c: CATH_1usyD00 (D:2-275)
1d: CATH_1usyC00 (C:1-275)
2a: CATH_1usyG01 (G:1-85,G:168-204)
2b: CATH_1usyF01 (F:1-85,F:168-203)
2c: CATH_1usyE01 (E:1-85,E:168-202)
2d: CATH_1usyH01 (H:1-85,H:168-202)
2e: CATH_1usyE02 (E:86-167)
2f: CATH_1usyF02 (F:86-167)
2g: CATH_1usyG02 (G:86-167)
2h: CATH_1usyH02 (H:86-167)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Thermotoga maritima. Organism_taxid: 243274. Strain: msb8.
(1)
1a
1usyA00
A:1-275
1b
1usyB00
B:1-275
1c
1usyD00
D:2-275
1d
1usyC00
C:1-275
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Thermotoga maritima. Organism_taxid: 243274. Strain: msb8.
(1)
2a
1usyG01
G:1-85,G:168-204
2b
1usyF01
F:1-85,F:168-203
2c
1usyE01
E:1-85,E:168-202
2d
1usyH01
H:1-85,H:168-202
2e
1usyE02
E:86-167
2f
1usyF02
F:86-167
2g
1usyG02
G:86-167
2h
1usyH02
H:86-167
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_HisG_1usyH01 (H:44-198)
1b: PFAM_HisG_1usyH02 (H:44-198)
1c: PFAM_HisG_1usyH03 (H:44-198)
1d: PFAM_HisG_1usyH04 (H:44-198)
2a: PFAM_tRNA_synt_His_1usyD01 (D:15-271)
2b: PFAM_tRNA_synt_His_1usyD02 (D:15-271)
2c: PFAM_tRNA_synt_His_1usyD03 (D:15-271)
2d: PFAM_tRNA_synt_His_1usyD04 (D:15-271)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PBP
(391)
Family
:
HisG
(10)
Thermotoga maritima
(3)
1a
HisG-1usyH01
H:44-198
1b
HisG-1usyH02
H:44-198
1c
HisG-1usyH03
H:44-198
1d
HisG-1usyH04
H:44-198
Clan
:
tRNA_synt_II
(64)
Family
:
tRNA-synt_His
(6)
Thermotoga maritima
(1)
2a
tRNA-synt_His-1usyD01
D:15-271
2b
tRNA-synt_His-1usyD02
D:15-271
2c
tRNA-synt_His-1usyD03
D:15-271
2d
tRNA-synt_His-1usyD04
D:15-271
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (327 KB)
Header - Asym.Unit
Biol.Unit 1 (317 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1USY
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
