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1URZ
Asym. Unit
Info
Asym.Unit (366 KB)
Biol.Unit 1 (188 KB)
Biol.Unit 2 (185 KB)
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(1)
Title
:
LOW PH INDUCED, MEMBRANE FUSION CONFORMATION OF THE ENVELOPE PROTEIN OF TICK-BORNE ENCEPHALITIS VIRUS
Authors
:
S. Bressanelli, F. A. Rey
Date
:
16 Nov 03 (Deposition) - 29 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Envelope Protein, Membrane Fusion, Virus/Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Bressanelli, K. Stiasny, S. L. Allison, E. A. Stura, S. Duquerroy, J. Lescar, F. X. Heinz, F. A. Rey
Structure Of A Flavivirus Envelope Glycoprotein In Its Low-Ph-Induced Membrane Fusion Conformation.
Embo J. V. 23 728 2004
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1urza1 (A:303-401)
1b: SCOP_d1urzb1 (B:303-401)
1c: SCOP_d1urzc1 (C:303-401)
1d: SCOP_d1urzd1 (D:303-401)
1e: SCOP_d1urze1 (E:303-401)
1f: SCOP_d1urzf1 (F:303-401)
2a: SCOP_d1urza2 (A:2-302)
2b: SCOP_d1urzb2 (B:2-302)
2c: SCOP_d1urzc2 (C:2-302)
2d: SCOP_d1urzd2 (D:2-302)
2e: SCOP_d1urze2 (E:2-302)
2f: SCOP_d1urzf2 (F:2-302)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Class II viral fusion proteins C-terminal domain
(27)
Protein domain
:
Envelope glycoprotein
(14)
Tick-borne encephalitis virus [TaxId: 11084]
(2)
1a
d1urza1
A:303-401
1b
d1urzb1
B:303-401
1c
d1urzc1
C:303-401
1d
d1urzd1
D:303-401
1e
d1urze1
E:303-401
1f
d1urzf1
F:303-401
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Viral glycoprotein, central and dimerisation domains
(24)
Superfamily
:
Viral glycoprotein, central and dimerisation domains
(24)
Family
:
Viral glycoprotein, central and dimerisation domains
(17)
Protein domain
:
Envelope glycoprotein
(9)
Tick-borne encephalitis virus [TaxId: 11084]
(2)
2a
d1urza2
A:2-302
2b
d1urzb2
B:2-302
2c
d1urzc2
C:2-302
2d
d1urzd2
D:2-302
2e
d1urze2
E:2-302
2f
d1urzf2
F:2-302
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CATH Domains
(4, 24)
Info
all CATH domains
1a: CATH_1urzA02 (A:52-62,A:122-134,A:192-235,A:257-271)
1b: CATH_1urzE02 (E:52-62,E:122-134,E:192-235,E:257-271)
1c: CATH_1urzC02 (C:52-62,C:122-134,C:192-235,C:257-271)
1d: CATH_1urzD02 (D:52-62,D:122-134,D:192-235,D:257-271)
1e: CATH_1urzB02 (B:52-62,B:122-134,B:192-235,B:257-271)
1f: CATH_1urzF02 (F:52-62,F:122-134,F:192-235,F:257-271)
2a: CATH_1urzA03 (A:63-121,A:236-256)
2b: CATH_1urzB03 (B:63-121,B:236-256)
2c: CATH_1urzC03 (C:63-121,C:236-256)
2d: CATH_1urzD03 (D:63-121,D:236-256)
2e: CATH_1urzE03 (E:63-121,E:236-256)
2f: CATH_1urzF03 (F:63-121,F:236-256)
3a: CATH_1urzA04 (A:300-401)
3b: CATH_1urzB04 (B:300-401)
3c: CATH_1urzC04 (C:300-401)
3d: CATH_1urzD04 (D:300-401)
3e: CATH_1urzE04 (E:300-401)
3f: CATH_1urzF04 (F:300-401)
4a: CATH_1urzA01 (A:2-51,A:135-191,A:272-299)
4b: CATH_1urzB01 (B:2-51,B:135-191,B:272-299)
4c: CATH_1urzC01 (C:2-51,C:135-191,C:272-299)
4d: CATH_1urzD01 (D:2-51,D:135-191,D:272-299)
4e: CATH_1urzE01 (E:2-51,E:135-191,E:272-299)
4f: CATH_1urzF01 (F:2-51,F:135-191,F:272-299)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Viral Envelope Glycoprotein; domain 2
(12)
Homologous Superfamily
:
Viral Envelope Glycoprotein, domain 2
(12)
Tick-borne encephalitis virus. Organism_taxid: 11088. Strain: neudoerfl
(1)
1a
1urzA02
A:52-62,A:122-134,A:192-235,A:257-271
1b
1urzE02
E:52-62,E:122-134,E:192-235,E:257-271
1c
1urzC02
C:52-62,C:122-134,C:192-235,C:257-271
1d
1urzD02
D:52-62,D:122-134,D:192-235,D:257-271
1e
1urzB02
B:52-62,B:122-134,B:192-235,B:257-271
1f
1urzF02
F:52-62,F:122-134,F:192-235,F:257-271
Topology
:
Viral Envelope Glycoprotein; domain 3
(12)
Homologous Superfamily
:
Viral Envelope Glycoprotein, domain 3
(12)
Tick-borne encephalitis virus. Organism_taxid: 11088. Strain: neudoerfl
(1)
2a
1urzA03
A:63-121,A:236-256
2b
1urzB03
B:63-121,B:236-256
2c
1urzC03
C:63-121,C:236-256
2d
1urzD03
D:63-121,D:236-256
2e
1urzE03
E:63-121,E:236-256
2f
1urzF03
F:63-121,F:236-256
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.350, no name defined]
(26)
Tick-borne encephalitis virus. Organism_taxid: 11088. Strain: neudoerfl
(1)
3a
1urzA04
A:300-401
3b
1urzB04
B:300-401
3c
1urzC04
C:300-401
3d
1urzD04
D:300-401
3e
1urzE04
E:300-401
3f
1urzF04
F:300-401
Topology
:
Tick-borne Encephalitis virus Glycoprotein; domain 1
(14)
Homologous Superfamily
:
Tick-borne Encephalitis virus Glycoprotein, domain 1
(14)
Tick-borne encephalitis virus. Organism_taxid: 11088. Strain: neudoerfl
(1)
4a
1urzA01
A:2-51,A:135-191,A:272-299
4b
1urzB01
B:2-51,B:135-191,B:272-299
4c
1urzC01
C:2-51,C:135-191,C:272-299
4d
1urzD01
D:2-51,D:135-191,D:272-299
4e
1urzE01
E:2-51,E:135-191,E:272-299
4f
1urzF01
F:2-51,F:135-191,F:272-299
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Flavi_glycop_C_1urzF01 (F:303-394)
1b: PFAM_Flavi_glycop_C_1urzF02 (F:303-394)
1c: PFAM_Flavi_glycop_C_1urzF03 (F:303-394)
1d: PFAM_Flavi_glycop_C_1urzF04 (F:303-394)
1e: PFAM_Flavi_glycop_C_1urzF05 (F:303-394)
1f: PFAM_Flavi_glycop_C_1urzF06 (F:303-394)
2a: PFAM_Flavi_glycoprot_1urzF07 (F:2-301)
2b: PFAM_Flavi_glycoprot_1urzF08 (F:2-301)
2c: PFAM_Flavi_glycoprot_1urzF09 (F:2-301)
2d: PFAM_Flavi_glycoprot_1urzF10 (F:2-301)
2e: PFAM_Flavi_glycoprot_1urzF11 (F:2-301)
2f: PFAM_Flavi_glycoprot_1urzF12 (F:2-301)
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Organisms
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Clan
:
no clan defined [family: Flavi_glycop_C]
(15)
Family
:
Flavi_glycop_C
(15)
Tick-borne encephalitis virus
(1)
1a
Flavi_glycop_C-1urzF01
F:303-394
1b
Flavi_glycop_C-1urzF02
F:303-394
1c
Flavi_glycop_C-1urzF03
F:303-394
1d
Flavi_glycop_C-1urzF04
F:303-394
1e
Flavi_glycop_C-1urzF05
F:303-394
1f
Flavi_glycop_C-1urzF06
F:303-394
Clan
:
no clan defined [family: Flavi_glycoprot]
(10)
Family
:
Flavi_glycoprot
(10)
Tick-borne encephalitis virus
(1)
2a
Flavi_glycoprot-1urzF07
F:2-301
2b
Flavi_glycoprot-1urzF08
F:2-301
2c
Flavi_glycoprot-1urzF09
F:2-301
2d
Flavi_glycoprot-1urzF10
F:2-301
2e
Flavi_glycoprot-1urzF11
F:2-301
2f
Flavi_glycoprot-1urzF12
F:2-301
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