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1UPX
Biol. Unit 2
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Asym.Unit (209 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS CONTAINING MOLECULES IN THE OXIDIZED AND REDUCED STATES.
Authors
:
D. Aragao, S. Macedo, E. P. Mitchell, P. F. Lindley
Date
:
14 Oct 03 (Deposition) - 02 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Hybrid Cluster, Reduced Iron-Sulfur, Oxidized Iron-Sulfur
(Keyword Search:
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Reference
:
S. Macedo, D. Aragao, E. P. Mitchell, P. F. Lindley
Structure Of The Hybrid Cluster Protein (Hcp) From Desulfovibrio Desulfuricans Atcc 27774 Containing Molecules In The Oxidized And Reduced States
Acta Crystallogr. , Sect. D V. 59 2065 2003
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: IRON/SULFUR/OXYGEN HYBRID CLUSTER (FSOa)
1b: IRON/SULFUR/OXYGEN HYBRID CLUSTER (FSOb)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: FE4-S3 CLUSTER (SF3a)
3b: FE4-S3 CLUSTER (SF3b)
4a: IRON/SULFUR CLUSTER (SF4a)
4b: IRON/SULFUR CLUSTER (SF4b)
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No.
Name
Count
Type
Full Name
1
FSO
1
Ligand/Ion
IRON/SULFUR/OXYGEN HYBRID CLUSTER
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
SF3
1
Ligand/Ion
FE4-S3 CLUSTER
4
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(4, 4)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
CYS B:6 , TYR B:7 , GLN B:8 , CYS B:9 , THR B:12 , CYS B:18 , GLY B:22 , VAL B:23 , CYS B:24 , LYS B:26 , THR B:75
BINDING SITE FOR RESIDUE SF4 B1544
2
AC5
SOFTWARE
HIS B:240 , GLU B:264 , TRP B:288 , CYS B:308 , CYS B:399 , CYS B:427 , CYS B:452 , GLU B:487 , FSO B:1546 , HOH B:2834
BINDING SITE FOR RESIDUE SF3 B1545
3
AC6
SOFTWARE
HIS B:240 , SER B:263 , GLU B:264 , TRP B:288 , ASN B:307 , CYS B:308 , CYS B:399 , CYS B:427 , CYS B:452 , GLU B:487 , LYS B:489 , ALA B:490 , SF3 B:1545 , HOH B:2521 , HOH B:2834
BINDING SITE FOR RESIDUE FSO B1546
4
AC7
SOFTWARE
ILE A:227 , SER A:362 , GLU A:364 , LYS A:434 , LYS B:313 , ASP B:314 , HOH B:2560 , HOH B:2836
BINDING SITE FOR RESIDUE MES B1547
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1upxa_ (A:)
1b: SCOP_d1upxb_ (B:)
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Protein Domains
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(
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)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Hybrid cluster protein (prismane protein)
(10)
Protein domain
:
Hybrid cluster protein (prismane protein)
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(4)
1a
d1upxa_
A:
1b
d1upxb_
B:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1upxA04 (A:378-543)
1b: CATH_1upxA03 (A:225-375)
1c: CATH_1upxB03 (B:225-375)
1d: CATH_1upxB04 (B:378-543)
2a: CATH_1upxA01 (A:1-139)
2b: CATH_1upxA02 (A:140-223)
2c: CATH_1upxB02 (B:140-223)
2d: CATH_1upxB01 (B:1-139)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2030, no name defined]
(25)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(4)
1a
1upxA04
A:378-543
1b
1upxA03
A:225-375
1c
1upxB03
B:225-375
1d
1upxB04
B:378-543
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
[code=1.20.1270.20, no name defined]
(10)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(4)
2a
1upxA01
A:1-139
2b
1upxA02
A:140-223
2c
1upxB02
B:140-223
2d
1upxB01
B:1-139
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Prismane_1upxB01 (B:4-543)
1b: PFAM_Prismane_1upxB02 (B:4-543)
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Clan
:
no clan defined [family: Prismane]
(9)
Family
:
Prismane
(9)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(2)
1a
Prismane-1upxB01
B:4-543
1b
Prismane-1upxB02
B:4-543
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Asymmetric Unit 1
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