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Getting 'Exon' information from database.
1UPQ
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PLECKSTRIN HOMOLOGY (PH) DOMAIN OF PEPP1
Authors
:
C. C. Milburn, D. Komander, M. Deak, D. R. Alessi, D. M. F. Van Aalten
Date
:
09 Oct 03 (Deposition) - 07 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ph Domain, Phosphoinositide Binding, Signal Transduction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Milburn, D. Komander, M. Deak, D. R. Alessi, D. M. F. Van Aalten
Crystal Structure Of The Pleckstrin Homology Domain Of Pepp1
To Be Published
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:75 , LYS A:88 , ARG A:91 , ARG A:142 , ARG A:146 , HOH A:2117 , HOH A:2118 , HOH A:2119
BINDING SITE FOR RESIDUE SO4 A1154
2
AC2
SOFTWARE
HIS A:56 , ARG A:91 , ARG A:146 , ARG A:150 , HOH A:2120 , HOH A:2121 , HOH A:2122 , HOH A:2123
BINDING SITE FOR RESIDUE SO4 A1155
3
AC3
SOFTWARE
LYS A:63 , GLN A:64 , SER A:66 , TYR A:86 , ARG A:146 , HOH A:2032 , HOH A:2041 , HOH A:2124 , HOH A:2125 , HOH A:2126 , HOH A:2127
BINDING SITE FOR RESIDUE SO4 A1156
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (A:54-153)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
PKHA4_HUMAN
54-153
1
A:54-153
[
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Exons
(4, 4)
Info
All Exons
Exon 1.3 (A:47-64)
Exon 1.4 (A:65-89)
Exon 1.5 (A:89-122)
Exon 1.6 (A:123-153)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263265
1
ENSE00001422227
chr19:
49371858-49371340
519
PKHA4_HUMAN
-
0
0
-
-
1.2
ENST00000263265
2
ENSE00000718344
chr19:
49370883-49370794
90
PKHA4_HUMAN
1-28
28
0
-
-
1.3
ENST00000263265
3
ENSE00000718336
chr19:
49368867-49368760
108
PKHA4_HUMAN
29-64
36
1
A:47-64
18
1.4
ENST00000263265
4
ENSE00000853366
chr19:
49364949-49364877
73
PKHA4_HUMAN
65-89
25
1
A:65-89
25
1.5
ENST00000263265
5
ENSE00000853365
chr19:
49364758-49364658
101
PKHA4_HUMAN
89-122
34
1
A:89-122
34
1.6
ENST00000263265
6
ENSE00000718312
chr19:
49363716-49363607
110
PKHA4_HUMAN
123-159
37
1
A:123-153
31
1.7
ENST00000263265
7
ENSE00000853364
chr19:
49362941-49362726
216
PKHA4_HUMAN
159-231
73
0
-
-
1.8
ENST00000263265
8
ENSE00001130298
chr19:
49362396-49362117
280
PKHA4_HUMAN
231-324
94
0
-
-
1.9
ENST00000263265
9
ENSE00000853362
chr19:
49360753-49360679
75
PKHA4_HUMAN
325-349
25
0
-
-
1.10
ENST00000263265
10
ENSE00000954897
chr19:
49357521-49357474
48
PKHA4_HUMAN
350-365
16
0
-
-
1.11
ENST00000263265
11
ENSE00000718302
chr19:
49357344-49357264
81
PKHA4_HUMAN
366-392
27
0
-
-
1.12
ENST00000263265
12
ENSE00000718297
chr19:
49357088-49356939
150
PKHA4_HUMAN
393-442
50
0
-
-
1.13
ENST00000263265
13
ENSE00000718291
chr19:
49355583-49355485
99
PKHA4_HUMAN
443-475
33
0
-
-
1.14
ENST00000263265
14
ENSE00001233909
chr19:
49351297-49351157
141
PKHA4_HUMAN
476-522
47
0
-
-
1.15
ENST00000263265
15
ENSE00001233902
chr19:
49348873-49348774
100
PKHA4_HUMAN
523-556
34
0
-
-
1.16
ENST00000263265
16
ENSE00001233897
chr19:
49348703-49348627
77
PKHA4_HUMAN
556-581
26
0
-
-
1.17
ENST00000263265
17
ENSE00001233890
chr19:
49344567-49344406
162
PKHA4_HUMAN
582-635
54
0
-
-
1.18
ENST00000263265
18
ENSE00001233882
chr19:
49342520-49342462
59
PKHA4_HUMAN
636-655
20
0
-
-
1.19
ENST00000263265
19
ENSE00001640853
chr19:
49341386-49341274
113
PKHA4_HUMAN
655-693
39
0
-
-
1.20
ENST00000263265
20
ENSE00001619444
chr19:
49340808-49340355
454
PKHA4_HUMAN
693-779
87
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1upqa_ (A:)
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(
)
(
)
Folds
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Superfamilies
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Phosphoinositol 3-phosphate binding protein-1, PEPP1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1upqa_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1upqA00 (A:47-153)
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1upqA00
A:47-153
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PH_1upqA01 (A:55-153)
View:
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
PH
(111)
Family
:
PH
(71)
Homo sapiens (Human)
(42)
1a
PH-1upqA01
A:55-153
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Chain A
Asymmetric Unit 1
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