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1UP8
Asym. Unit
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Asym.Unit (425 KB)
Biol.Unit 1, α-C (1.2 MB)
Biol.Unit 1 (1.2 MB)
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(1)
Title
:
RECOMBINANT VANADIUM-DEPENDENT BROMOPEROXIDASE FROM RED ALGAE CORALLINA PILULIFERA
Authors
:
E. Garcia-Rodriguez, M. Isupov, T. Ohshiro, Y. Izumi, J. A. Littlechild
Date
:
29 Sep 03 (Deposition) - 30 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Haloperoxidase, Vanadate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Garcia-Rodriguez, T. Ohshiro, T. Aibara, Y. Izumi, J. Littlechild
Enhancing Effect Of Calcium And Vanadium Ions On Thermal Stability Of Bromoperoxidase From Corallina Pilulifera.
J. Biol. Inorg. Chem. V. 10 275 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
2j: PHOSPHATE ION (PO4j)
2k: PHOSPHATE ION (PO4k)
2l: PHOSPHATE ION (PO4l)
2m: PHOSPHATE ION (PO4m)
2n: PHOSPHATE ION (PO4n)
2o: PHOSPHATE ION (PO4o)
2p: PHOSPHATE ION (PO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
PO4
16
Ligand/Ion
PHOSPHATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:399 , ARG A:407 , PRO A:477 , HIS A:479 , SER A:484 , GLY A:485 , HIS A:486 , ARG A:546 , HIS A:552 , PO4 A:601
BINDING SITE FOR RESIDUE PO4 A 598
02
AC2
SOFTWARE
PHE A:360 , GLN A:362 , ASP A:364 , ASP A:367 , GLN A:369 , HOH A:2397
BINDING SITE FOR RESIDUE CA A 599
03
AC3
SOFTWARE
ARG A:216 , GLY A:217 , ASN A:223 , ILE A:228 , GLU A:233 , HOH A:2284 , HOH A:2555 , HOH A:2556
BINDING SITE FOR RESIDUE PO4 A 600
04
AC4
SOFTWARE
PRO A:477 , HIS A:479 , HIS A:486 , ARG A:546 , PO4 A:598 , HOH A:2421 , HOH A:2557 , HOH A:2558 , PHE B:372
BINDING SITE FOR RESIDUE PO4 A 601
05
AC5
SOFTWARE
ASN A:263 , ASP A:266 , ARG B:284 , GLY B:317
BINDING SITE FOR RESIDUE PO4 A 602
06
AC6
SOFTWARE
LYS B:399 , ARG B:407 , PRO B:477 , HIS B:479 , SER B:484 , GLY B:485 , HIS B:486 , ARG B:546 , HIS B:552 , PO4 B:601
BINDING SITE FOR RESIDUE PO4 B 598
07
AC7
SOFTWARE
PHE B:360 , GLN B:362 , ASP B:364 , ASP B:367 , GLN B:369 , HOH B:2431
BINDING SITE FOR RESIDUE CA B 599
08
AC8
SOFTWARE
GLY B:217 , GLU B:233 , HOH B:2309 , HOH B:2312 , HOH B:2604 , HOH B:2605 , HOH B:2606
BINDING SITE FOR RESIDUE PO4 B 600
09
AC9
SOFTWARE
PHE A:372 , GLU B:125 , PRO B:477 , HIS B:479 , HIS B:486 , ARG B:546 , PO4 B:598 , HOH B:2197 , HOH B:2455
BINDING SITE FOR RESIDUE PO4 B 601
10
BC1
SOFTWARE
ARG A:284 , ALA A:318 , ASN B:263 , ASP B:266 , GLU B:271
BINDING SITE FOR RESIDUE PO4 B 602
11
BC2
SOFTWARE
LYS C:399 , ARG C:407 , PRO C:477 , HIS C:479 , SER C:484 , GLY C:485 , HIS C:486 , ARG C:546 , HIS C:552 , PO4 C:601
BINDING SITE FOR RESIDUE PO4 C 598
12
BC3
SOFTWARE
PHE C:360 , GLN C:362 , ASP C:364 , ASP C:367 , GLN C:369 , HOH C:2409
BINDING SITE FOR RESIDUE CA C 599
13
BC4
SOFTWARE
GLY C:217 , ILE C:228 , GLU C:233 , HOH C:2293 , HOH C:2560 , HOH C:2561 , HOH C:2562
BINDING SITE FOR RESIDUE PO4 C 600
14
BC5
SOFTWARE
GLU C:125 , PRO C:477 , HIS C:479 , ARG C:546 , PO4 C:598 , HOH C:2563 , HOH C:2564 , HOH C:2565 , HOH C:2566 , PHE D:372
BINDING SITE FOR RESIDUE PO4 C 601
15
BC6
SOFTWARE
ASP C:266 , GLU C:271 , ARG D:284
BINDING SITE FOR RESIDUE PO4 C 602
16
BC7
SOFTWARE
LYS D:399 , ARG D:407 , PRO D:477 , HIS D:479 , SER D:484 , GLY D:485 , HIS D:486 , ARG D:546 , HIS D:552 , PO4 D:601 , HOH D:2592
BINDING SITE FOR RESIDUE PO4 D 598
17
BC8
SOFTWARE
PHE D:360 , GLN D:362 , ASP D:364 , ASP D:367 , GLN D:369 , HOH D:2424
BINDING SITE FOR RESIDUE CA D 599
18
BC9
SOFTWARE
ARG D:216 , GLY D:217 , ILE D:228 , GLU D:233 , HOH D:2308 , HOH D:2593 , HOH D:2594
BINDING SITE FOR RESIDUE PO4 D 600
19
CC1
SOFTWARE
PHE C:372 , PRO D:477 , HIS D:479 , ARG D:546 , PO4 D:598 , HOH D:2595 , HOH D:2596 , HOH D:2597
BINDING SITE FOR RESIDUE PO4 D 601
20
CC2
SOFTWARE
ARG C:284 , ASN D:263 , ASP D:266 , HOH D:2598
BINDING SITE FOR RESIDUE PO4 D 602
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1up8a_ (A:)
1b: SCOP_d1up8b_ (B:)
1c: SCOP_d1up8c_ (C:)
1d: SCOP_d1up8d_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Acid phosphatase/Vanadium-dependent haloperoxidase
(16)
Superfamily
:
Acid phosphatase/Vanadium-dependent haloperoxidase
(16)
Family
:
Haloperoxidase (bromoperoxidase)
(3)
Protein domain
:
Haloperoxidase (bromoperoxidase)
(3)
Red algae (Corallina pilulifera) [TaxId: 78447]
(1)
1a
d1up8a_
A:
1b
d1up8b_
B:
1c
d1up8c_
C:
1d
d1up8d_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1up8A00 (A:1-597)
1b: CATH_1up8B00 (B:1-597)
1c: CATH_1up8C00 (C:1-597)
1d: CATH_1up8D00 (D:1-597)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Vanadium-containing Chloroperoxidase; domain 2
(13)
Homologous Superfamily
:
Vanadium-containing Chloroperoxidase, domain 2
(13)
Corallina pilulifera. Organism_taxid: 78447.
(1)
1a
1up8A00
A:1-597
1b
1up8B00
B:1-597
1c
1up8C00
C:1-597
1d
1up8D00
D:1-597
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PAP2_1up8D01 (D:373-573)
1b: PFAM_PAP2_1up8D02 (D:373-573)
1c: PFAM_PAP2_1up8D03 (D:373-573)
1d: PFAM_PAP2_1up8D04 (D:373-573)
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Clan
:
pap2
(9)
Family
:
PAP2
(9)
Corallina pilulifera (Red coralline alga)
(1)
1a
PAP2-1up8D01
D:373-573
1b
PAP2-1up8D02
D:373-573
1c
PAP2-1up8D03
D:373-573
1d
PAP2-1up8D04
D:373-573
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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