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Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
STRUCTURE OF THE ENDOGLUCANASE CEL6 FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH CELLOBIOSE AT 1.75 ANGSTROM
Authors
:
A. Varrot, S. Leydier, G. Pell, H. J. Gilbert, G. J. Davies
Date
:
26 Sep 03 (Deposition) - 18 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Glycoside Hydrolase, Family 6
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Varrot, S. Leydier, G. Pell, J. M. Macdonald, R. V. Stick, B. Henrissat, H. J. Gilbert, G. J. Davies
Mycobacterium Tuberculosis Strains Possess Functional Cellulases.
J. Biol. Chem. V. 280 20181 2005
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
2a: ACETATE ION (ACTa)
3a: BETA-D-GLUCOSE (BGCa)
3b: BETA-D-GLUCOSE (BGCb)
4a: S-OXYMETHIONINE (MHOa)
5a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1PG
1
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
ACT
1
Ligand/Ion
ACETATE ION
3
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
4
MHO
1
Mod. Amino Acid
S-OXYMETHIONINE
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:247 , ASN A:277 , TRP A:319 , BGC A:1383 , HOH A:2212
BINDING SITE FOR RESIDUE BGC A1382
2
AC2
SOFTWARE
ASP A:168 , ASP A:206 , MET A:210 , HIS A:247 , TRP A:250 , ASN A:277 , BGC A:1382 , HOH A:2108 , HOH A:2147 , HOH A:2207 , HOH A:2313 , HOH A:2314
BINDING SITE FOR RESIDUE BGC A1383
3
AC3
SOFTWARE
ARG A:145 , TYR A:172 , THR A:355 , GLY A:357 , ARG A:358 , GLY A:359 , HOH A:2315
BINDING SITE FOR RESIDUE SO4 A1384
4
AC4
SOFTWARE
ALA A:88 , ARG A:269 , HIS A:299 , HOH A:2316
BINDING SITE FOR RESIDUE ACT A1385
5
AC5
SOFTWARE
ASN A:123 , THR A:124 , HOH A:2317
BINDING SITE FOR RESIDUE 1PG A1386
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1up0a_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
Putative cellulase Rv0062 (Cel6, CelA1)
(4)
Mycobacterium tuberculosis [TaxId: 1773]
(4)
1a
d1up0a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1up0A00 (A:88-380)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
7-stranded glycosidases (cellulases)
(28)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(4)
1a
1up0A00
A:88-380
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_6_1up0A01 (A:98-369)
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Clans
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Organisms
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(
)
Clan
:
no clan defined [family: Glyco_hydro_6]
(10)
Family
:
Glyco_hydro_6
(10)
Mycobacterium tuberculosis
(4)
1a
Glyco_hydro_6-1up0A01
A:98-369
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Asymmetric Unit 1
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