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1UJL
Asym. Unit
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Asym.Unit (217 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE HERG K+ CHANNEL S5-P EXTRACELLULAR LINKER
Authors
:
A. M. Torres, P. S. Bansal, M. Sunde, C. E. Clarke, J. A. Bursill, D. J. Smith, A. Bauskin, S. N. Breit, T. J. Campbell, P. F. Alewood, P. W. Kuchel, J. I. Vandenberg
Date
:
05 Aug 03 (Deposition) - 04 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Two Helices, Amphiphatic Helix, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Torres, P. S. Bansal, M. Sunde, C. E. Clarke, J. A. Bursill, D. J. Smith, A. Bauskin, S. N. Breit, T. J. Campbell, P. F. Alewood, P. W. Kuchel, J. I. Vandenberg
Structure Of The Herg K+ Channel S5P Extracellular Linker: Role Of An Amphipathic Alpha-Helix In C-Type Inactivation.
J. Biol. Chem. V. 278 42136 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_068265 (I2L, chain A, )
02: VAR_008923 (G3C, chain A, )
03: VAR_008922 (G3R, chain A, )
04: VAR_068266 (G3S, chain A, )
05: VAR_008581 (R13C, chain A, )
06: VAR_008924 (G15S, chain A, )
07: VAR_009914 (W16C, chain A, )
08: VAR_008925 (N19D, chain A, )
09: VAR_023840 (N19K, chain A, )
10: VAR_008582 (I24R, chain A, )
11: VAR_009915 (I24T, chain A, )
12: VAR_068267 (P27R, chain A, )
13: VAR_008926 (G32S, chain A, )
14: VAR_008927 (G35S, chain A, )
15: VAR_009916 (D40N, chain A, )
16: VAR_008928 (Y42H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_068265
I
571
L
KCNH2_HUMAN
Disease (LQT2)
---
A
I
2
L
02
UniProt
VAR_008923
G
572
C
KCNH2_HUMAN
Disease (LQT2)
---
A
G
3
C
03
UniProt
VAR_008922
G
572
R
KCNH2_HUMAN
Disease (LQT2)
---
A
G
3
R
04
UniProt
VAR_068266
G
572
S
KCNH2_HUMAN
Disease (LQT2)
---
A
G
3
S
05
UniProt
VAR_008581
R
582
C
KCNH2_HUMAN
Disease (LQT2)
---
A
R
13
C
06
UniProt
VAR_008924
G
584
S
KCNH2_HUMAN
Disease (LQT2)
---
A
G
15
S
07
UniProt
VAR_009914
W
585
C
KCNH2_HUMAN
Disease (LQT2)
---
A
W
16
C
08
UniProt
VAR_008925
N
588
D
KCNH2_HUMAN
Disease (LQT2)
---
A
N
19
D
09
UniProt
VAR_023840
N
588
K
KCNH2_HUMAN
Disease (SQT1)
---
A
N
19
K
10
UniProt
VAR_008582
I
593
R
KCNH2_HUMAN
Disease (LQT2)
28928904
A
I
24
R
11
UniProt
VAR_009915
I
593
T
KCNH2_HUMAN
Disease (LQT2)
---
A
I
24
T
12
UniProt
VAR_068267
P
596
R
KCNH2_HUMAN
Disease (LQT2)
---
A
P
27
R
13
UniProt
VAR_008926
G
601
S
KCNH2_HUMAN
Disease (LQT2)
---
A
G
32
S
14
UniProt
VAR_008927
G
604
S
KCNH2_HUMAN
Disease (LQT2)
---
A
G
35
S
15
UniProt
VAR_009916
D
609
N
KCNH2_HUMAN
Disease (LQT2)
---
A
D
40
N
16
UniProt
VAR_008928
Y
611
H
KCNH2_HUMAN
Disease (LQT2)
---
A
Y
42
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(1, 1)
Info
All Exons
Exon 1.8a (A:1-42)
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All Exon Boundaries
1: Boundary 1.7/1.8a
2: Boundary 1.8a/1.8c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262186
1a
ENSE00001475694
chr7:
150675403-150674926
478
KCNH2_HUMAN
1-26
26
0
-
-
1.2
ENST00000262186
2
ENSE00001141390
chr7:
150672029-150671799
231
KCNH2_HUMAN
26-103
78
0
-
-
1.3
ENST00000262186
3
ENSE00001141475
chr7:
150656824-150656660
165
KCNH2_HUMAN
103-158
56
0
-
-
1.4
ENST00000262186
4
ENSE00000729926
chr7:
150655590-150655147
444
KCNH2_HUMAN
158-306
149
0
-
-
1.5
ENST00000262186
5
ENSE00000909768
chr7:
150654590-150654379
212
KCNH2_HUMAN
306-376
71
0
-
-
1.7
ENST00000262186
7
ENSE00000909766
chr7:
150649941-150649513
429
KCNH2_HUMAN
377-519
143
0
-
-
1.8a
ENST00000262186
8a
ENSE00000909764
chr7:
150648923-150648536
388
KCNH2_HUMAN
520-649
130
1
A:1-42
42
1.8c
ENST00000262186
8c
ENSE00001677788
chr7:
150648208-150648009
200
KCNH2_HUMAN
649-715
67
0
-
-
1.9a
ENST00000262186
9a
ENSE00001801009
chr7:
150647508-150647256
253
KCNH2_HUMAN
716-800
85
0
-
-
1.10
ENST00000262186
10
ENSE00000978099
chr7:
150646137-150645944
194
KCNH2_HUMAN
800-864
65
0
-
-
1.11
ENST00000262186
11
ENSE00000872389
chr7:
150645631-150645532
100
KCNH2_HUMAN
865-898
34
0
-
-
1.12
ENST00000262186
12
ENSE00001141381
chr7:
150644966-150644694
273
KCNH2_HUMAN
898-989
92
0
-
-
1.13
ENST00000262186
13
ENSE00001141375
chr7:
150644602-150644416
187
KCNH2_HUMAN
989-1051
63
0
-
-
1.14
ENST00000262186
14
ENSE00001141370
chr7:
150644142-150643965
178
KCNH2_HUMAN
1051-1110
60
0
-
-
1.15
ENST00000262186
15
ENSE00000872388
chr7:
150642602-150642049
554
KCNH2_HUMAN
1111-1159
49
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ujla_ (A:)
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Organisms
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(
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Class
:
Peptides
(792)
Fold
:
Inactivation gate of potassium and sodium channels
(7)
Superfamily
:
Inactivation gate of potassium and sodium channels
(7)
Family
:
Inactivation gate of potassium and sodium channels
(7)
Protein domain
:
Potassium voltage-gated channel subfamily H (HERG) extracellular linker
(1)
Synthetic, based on human sequence
(1)
1a
d1ujla_
A:
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ion_trans_1ujlA01 (A:1-42)
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Organisms
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(
)
Clan
:
Ion_channel
(150)
Family
:
Ion_trans
(5)
Homo sapiens (Human)
(2)
1a
Ion_trans-1ujlA01
A:1-42
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Asymmetric Unit 1
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