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Biol. Unit 1
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Asym.Unit (372 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (186 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMER (I122M/K124W)
Authors
:
N. Maruyama, Y. Maruyama, T. Tsuruki, E. Okuda, M. Yoshikawa, S. Utsumi
Date
:
16 Jul 03 (Deposition) - 16 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Double-Stranded Beta Helix, Seed Storage Protein, Sugar Binding Protein
(Keyword Search:
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Reference
:
N. Maruyama, Y. Maruyama, T. Tsuruki, E. Okuda, M. Yoshikawa, S. Utsumi
Creation Of Soybean Beta-Conglycinin Beta With Strong Phagocytosis-Stimulating Activity
Biochim. Biophys. Acta V. 1648 99 2003
(for further references see the
PDB file header
)
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Hetero Components
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SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1uija1 (A:6-175)
1b: SCOP_d1uija2 (A:183-392)
1c: SCOP_d1uijf1 (F:6-175)
1d: SCOP_d1uijf2 (F:183-392)
1e: SCOP_d1uijb1 (B:6-175)
1f: SCOP_d1uijb2 (B:183-392)
1g: SCOP_d1uijc1 (C:6-175)
1h: SCOP_d1uijc2 (C:183-392)
1i: SCOP_d1uijd1 (D:6-175)
1j: SCOP_d1uijd2 (D:183-392)
1k: SCOP_d1uije1 (E:6-175)
1l: SCOP_d1uije2 (E:183-392)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Germin/Seed storage 7S protein
(34)
Protein domain
:
Seed storage 7S protein
(18)
Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
(3)
1a
d1uija1
A:6-175
1b
d1uija2
A:183-392
1c
d1uijf1
F:6-175
1d
d1uijf2
F:183-392
1e
d1uijb1
B:6-175
1f
d1uijb2
B:183-392
1g
d1uijc1
C:6-175
1h
d1uijc2
C:183-392
1i
d1uijd1
D:6-175
1j
d1uijd2
D:183-392
1k
d1uije1
E:6-175
1l
d1uije2
E:183-392
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1uijB01 (B:214-390)
1b: CATH_1uijC01 (C:191-389)
1c: CATH_1uijE01 (E:214-390)
1d: CATH_1uijF01 (F:191-389)
1e: CATH_1uijA01 (A:214-391)
1f: CATH_1uijD01 (D:214-391)
1g: CATH_1uijC02 (C:8-190)
1h: CATH_1uijF02 (F:8-190)
1i: CATH_1uijA02 (A:8-193)
1j: CATH_1uijD02 (D:8-193)
1k: CATH_1uijB02 (B:9-193)
1l: CATH_1uijE02 (E:9-193)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Soybean (Glycine max)
(10)
1a
1uijB01
B:214-390
1b
1uijC01
C:191-389
1c
1uijE01
E:214-390
1d
1uijF01
F:191-389
1e
1uijA01
A:214-391
1f
1uijD01
D:214-391
1g
1uijC02
C:8-190
1h
1uijF02
F:8-190
1i
1uijA02
A:8-193
1j
1uijD02
D:8-193
1k
1uijB02
B:9-193
1l
1uijE02
E:9-193
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Cupin_1_1uijF01 (F:194-392)
1b: PFAM_Cupin_1_1uijF02 (F:194-392)
1c: PFAM_Cupin_1_1uijF03 (F:194-392)
1d: PFAM_Cupin_1_1uijF04 (F:194-392)
1e: PFAM_Cupin_1_1uijF05 (F:194-392)
1f: PFAM_Cupin_1_1uijF06 (F:194-392)
1g: PFAM_Cupin_1_1uijF07 (F:194-392)
1h: PFAM_Cupin_1_1uijF08 (F:194-392)
1i: PFAM_Cupin_1_1uijF09 (F:194-392)
1j: PFAM_Cupin_1_1uijF10 (F:194-392)
1k: PFAM_Cupin_1_1uijF11 (F:194-392)
1l: PFAM_Cupin_1_1uijF12 (F:194-392)
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Clan
:
Cupin
(179)
Family
:
Cupin_1
(15)
Glycine max (Soybean) (Glycine hispida)
(5)
1a
Cupin_1-1uijF01
F:194-392
1b
Cupin_1-1uijF02
F:194-392
1c
Cupin_1-1uijF03
F:194-392
1d
Cupin_1-1uijF04
F:194-392
1e
Cupin_1-1uijF05
F:194-392
1f
Cupin_1-1uijF06
F:194-392
1g
Cupin_1-1uijF07
F:194-392
1h
Cupin_1-1uijF08
F:194-392
1i
Cupin_1-1uijF09
F:194-392
1j
Cupin_1-1uijF10
F:194-392
1k
Cupin_1-1uijF11
F:194-392
1l
Cupin_1-1uijF12
F:194-392
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Show PDB file:
Asym.Unit (372 KB)
Header - Asym.Unit
Biol.Unit 1 (185 KB)
Header - Biol.Unit 1
Biol.Unit 2 (186 KB)
Header - Biol.Unit 2
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