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(-) Description

Title :  CRYSTAL STRUCTURE OF SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMER (I122M/K124W)
 
Authors :  N. Maruyama, Y. Maruyama, T. Tsuruki, E. Okuda, M. Yoshikawa, S. Utsumi
Date :  16 Jul 03  (Deposition) - 16 Jul 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Double-Stranded Beta Helix, Seed Storage Protein, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Maruyama, Y. Maruyama, T. Tsuruki, E. Okuda, M. Yoshikawa, S. Utsumi
Creation Of Soybean Beta-Conglycinin Beta With Strong Phagocytosis-Stimulating Activity
Biochim. Biophys. Acta V. 1648 99 2003
PubMed-ID: 12758152  |  Reference-DOI: 10.1016/S1570-9639(03)00113-4
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA SUBUNIT OF BETA CONGLYCININ
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21D
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: SOYBEAN
    Organism Scientific: GLYCINE MAX
    Organism Taxid: 3847
    Synonym: SEED STORAGE PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UIJ)

(-) Sites  (0, 0)

(no "Site" information available for 1UIJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UIJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UIJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UIJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UIJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1UIJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:377
 aligned with GLCB_SOYBN | P25974 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:389
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406         
           GLCB_SOYBN    27 REDENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 415
               SCOP domains --d1uija1 A:6-175 Seed storage 7S protein                                                                                                                                   -------d1uija2 A:183-392 Seed storage 7S protein                                                                                                                                                                          SCOP domains
               CATH domains ----1uijA02 A:8-193 Jelly Rolls                                                                                                                                                               --------------------1uijA01 A:214-391 Jelly Rolls                                                                                                                                                     - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhh.eeeeee...eeeeee.hhhhhhhhhhhhh..eeeeeee...eeeeeeee.eeeeeeeee..eeeeee....eeeeee...eeeee....eeeeee......eeeeeeeee........eee........hhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhh....eee.hhhhhhhhh......hhhhhhh....ee.......ee...eeeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeeee.eeeeeeeee.------------..eeeeeeeee...eeee.....eeeee...eeeeeeee......eee.......hhhhhhhhhhhhhh..hhhhhhhhh.......eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uij A   4 REDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK------------LEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283     |   -       303       313       323       333       343       353       363       373       383         
                                                                                                                                                                                                                                                                                                                       289          302                                                                                          


Chain B from PDB  Type:PROTEIN  Length:370
 aligned with GLCB_SOYBN | P25974 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:389
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406         
           GLCB_SOYBN    27 REDENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 415
               SCOP domains --d1uijb1 B:6-175 Seed storage 7S protein                                                                                                                                          d1uijb2 B:183-392 Seed storage 7S protein                                                                                                                                                                          SCOP domains
               CATH domains -----1uijB02 B:9-193 Jelly Rolls                                                                                                                                                              --------------------1uijB01 B:214-390 Jelly Rolls                                                                                                                                                    -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhheeeeee...eeeeee.hhhhhhhhhhhhh..eeeeeee...eeeeeeee.eeeeeeeee..eeeeee....eeeeee...eeeee....eeeeee......eeeeeeeee........eee........hhhhhhhhhhhhhhhh.hhhhhhhhh..-------....eee.hhhhhhhhhh..ee............ee.hhh...eee..eeeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeeeeeeeeeeeeee.------------..eeeeeeee....eeee.....eeeeeeeeeeeeeeee......eee......hhhhhhhhhhhhhhh..hhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uij B   4 REDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG-------QEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK------------LEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173 |     183       193       203       213       223       233       243       253       263       273       283     |   -       303       313       323       333       343       353       363       373       383         
                                                                                                                                                                                                     175     183                                                                                                       289          302                                                                                          


Chain C from PDB  Type:PROTEIN  Length:346
 aligned with GLCB_SOYBN | P25974 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:387
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       
           GLCB_SOYBN    29 DENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 415
               SCOP domains d1uijc1 C:6-175 Seed storage 7S protein                                                                                                                                          d1uijc2                        C:183-392 Seed storage 7S protein                                                                                                                                                   SCOP domains
               CATH domains --1uijC02 C:8-190 Jelly Rolls                                                                                                                                                                                   1uijC01 C:191-389 Jelly Rolls                                                                                                                                                   --- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.......eeeee..eeeee..hhhhhhhhhhhhh..eeeeeee....eeeeeee.eeeeeeeee..eeeeee....eeeeee...eeeee....eeeee.......eeeeeeeee........eee........hhhhhhhhhhhhhhhh.hhhhhhhhh..-------....ee..-----------------------...ee.hhh...ee...eeeeee....hhhhhhhheeeeeeee....eeeeeee...eeeeeeee..eeeeeeeee-----------..eeeeeeeee....eeee.....eeeee...eeeeeeee......eee......hhhhhhhhhhhhhhh..hhhhhhhhhh......ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uij C   6 DENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG-------QEGVIVEL-----------------------DEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK-----------PLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 392
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    |    -         -       192       202       212       222       232       242       252       262   |     -     | 305       315       325       335       345       355       365       375       385       
                                                                                                                                                                                                   175     183    190                     191                                                                        266         301                                                                                           


Chain D from PDB  Type:PROTEIN  Length:377
 aligned with GLCB_SOYBN | P25974 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:389
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406         
           GLCB_SOYBN    27 REDENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 415
               SCOP domains --d1uijd1 D:6-175 Seed storage 7S protein                                                                                                                                   -------d1uijd2 D:183-392 Seed storage 7S protein                                                                                                                                                                          SCOP domains
               CATH domains ----1uijD02 D:8-193 Jelly Rolls                                                                                                                                                               --------------------1uijD01 D:214-391 Jelly Rolls                                                                                                                                                     - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhheeeeee...eeeeee.hhhhhhhhhhhhh..eeeeeee...eeeeeeee.eeeeeeeee..eeeeee....eeeeee...eeeee....eeeeee......eeeeeeeee........eee........hhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhh....eee.hhhhhhhhhh.....hhhhhhh....ee.......eee..eeeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeeee.eeeeeeeee.------------..eeeeeeeee...eeee.....eeeee...eeeeeeee......eee.......hhhhhhhhhhhhhh..hhhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uij D   4 REDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK------------LEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283     |   -       303       313       323       333       343       353       363       373       383         
                                                                                                                                                                                                                                                                                                                       289          302                                                                                          


Chain E from PDB  Type:PROTEIN  Length:370
 aligned with GLCB_SOYBN | P25974 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:389
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406         
           GLCB_SOYBN    27 REDENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 415
               SCOP domains --d1uije1 E:6-175 Seed storage 7S protein                                                                                                                                          d1uije2 E:183-392 Seed storage 7S protein                                                                                                                                                                          SCOP domains
               CATH domains -----1uijE02 E:9-193 Jelly Rolls                                                                                                                                                              --------------------1uijE01 E:214-390 Jelly Rolls                                                                                                                                                    -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhheeeeeee..eeeeee.hhhhhhhhhhhhh..eeeeeee...eeeeeeee.eeeeeeeee..eeeeeee..eeeeeee...eeeee....eeeeee......eeeeeeeee........eee........hhhhhhhhhhhhhhh..hhhhhhhhh..-------....eee.hhhhhhhhhh..ee.hhhhh......ee.hhh...eee..eeeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeeeeeeeeeeeeee.------------..eeeeeeee....eeee.....eeeeeeeeeeeeeeee......eee......hhhhhhhhhhhhhhh..hhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uij E   4 REDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG-------QEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK------------LEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173 |     183       193       203       213       223       233       243       253       263       273       283     |   -       303       313       323       333       343       353       363       373       383         
                                                                                                                                                                                                     175     183                                                                                                       289          302                                                                                          


Chain F from PDB  Type:PROTEIN  Length:346
 aligned with GLCB_SOYBN | P25974 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:387
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       
           GLCB_SOYBN    29 DENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 415
               SCOP domains d1uijf1 F:6-175 Seed storage 7S protein                                                                                                                                          d1uijf2                        F:183-392 Seed storage 7S protein                                                                                                                                                   SCOP domains
               CATH domains --1uijF02 F:8-190 Jelly Rolls                                                                                                                                                                                   1uijF01 F:191-389 Jelly Rolls                                                                                                                                                   --- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF01 F:194-392                                                                                                                                                        Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF02 F:194-392                                                                                                                                                        Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF03 F:194-392                                                                                                                                                        Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF04 F:194-392                                                                                                                                                        Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF05 F:194-392                                                                                                                                                        Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF06 F:194-392                                                                                                                                                        Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF07 F:194-392                                                                                                                                                        Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF08 F:194-392                                                                                                                                                        Pfam domains (8)
           Pfam domains (9) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF09 F:194-392                                                                                                                                                        Pfam domains (9)
          Pfam domains (10) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF10 F:194-392                                                                                                                                                        Pfam domains (10)
          Pfam domains (11) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF11 F:194-392                                                                                                                                                        Pfam domains (11)
          Pfam domains (12) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------       --------                       ---Cupin_1-1uijF12 F:194-392                                                                                                                                                        Pfam domains (12)
         Sec.struct. author ......ee.....eeeeee...eeeeee.hhhhhhhhhhhhh..eeeeeee...eeeeeeee.eeeeeeeee..eeeeee....eeeeee...eeeee....eeeeee......eeeeeeeee........eee........hhhhhhhhhhhhhhhh.hhhhhhhhhh.-------....ee..-----------------------...ee.......eee..eeeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeeee..eeeeeeee.-----------...eeeeeeee....eeee.....eeeee...eeeeeeee......eee.......hhhhhhhhhhhhhh..hhhhhhhhh.......eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uij F   6 DENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG-------QEGVIVEL-----------------------DEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK-----------PLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDA 392
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    |    -         -       192       202       212       222       232       242       252       262   |     -     | 305       315       325       335       345       355       365       375       385       
                                                                                                                                                                                                   175     183    190                     191                                                                        266         301
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Jelly Rolls (1293)
(-)
Homologous Superfamily: Jelly Rolls (177)
(-)
Soybean (Glycine max) (10)
1a1uijB01B:214-390
1b1uijC01C:191-389
1c1uijE01E:214-390
1d1uijF01F:191-389
1e1uijA01A:214-391
1f1uijD01D:214-391
1g1uijC02C:8-190
1h1uijF02F:8-190
1i1uijA02A:8-193
1j1uijD02D:8-193
1k1uijB02B:9-193
1l1uijE02E:9-193

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: Cupin (179)
(-)
Family: Cupin_1 (15)
(-)
Glycine max (Soybean) (Glycine hispida) (5)
1aCupin_1-1uijF01F:194-392
1bCupin_1-1uijF02F:194-392
1cCupin_1-1uijF03F:194-392
1dCupin_1-1uijF04F:194-392
1eCupin_1-1uijF05F:194-392
1fCupin_1-1uijF06F:194-392
1gCupin_1-1uijF07F:194-392
1hCupin_1-1uijF08F:194-392
1iCupin_1-1uijF09F:194-392
1jCupin_1-1uijF10F:194-392
1kCupin_1-1uijF11F:194-392
1lCupin_1-1uijF12F:194-392

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (GLCB_SOYBN | P25974)
molecular function
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.
cellular component
    GO:0033095    aleurone grain    A membrane-bounded storage granule found in cells of the aleurone layer in plants; contains either a protein matrix, protein-carbohydrate bodies and/or globoids. Aleurone grains are formed by the vacuole, rough endoplasmic reticulum and dictyosomes.
    GO:0005773    vacuole    A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

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  1uij
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  GLCB_SOYBN | P25974
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLCB_SOYBN | P25974: 1ipj 1ipk

(-) Related Entries Specified in the PDB File

1uik 1UIK CONTAINS ALPHA PRIME SUBUNIT OF BETA-CONGLYCININ