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1UG9
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUCODEXTRANASE FROM ARTHROBACTER GLOBIFORMIS I42
Authors
:
M. Mizuno, T. Tonozuka, S. Suzuki, R. Uotsu-Tomita, A. Ohtaki, S. Kamit A. Nishikawa, Y. Sakano
Date
:
16 Jun 03 (Deposition) - 09 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Alpha-Six-Barrels, Gh Family 15, Hydrolase
(Keyword Search:
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Reference
:
M. Mizuno, T. Tonozuka, S. Suzuki, R. Uotsu-Tomita, S. Kamitori, A. Nishikawa, Y. Sakano
Structural Insights Into Substrate Specificity And Function Of Glucodextranase
J. Biol. Chem. V. 279 10575 2004
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:139 , THR A:142 , GLY A:144 , ASP A:146 , ASP A:159
BINDING SITE FOR RESIDUE CA A 2001
2
AC2
SOFTWARE
PHE A:358 , GLN A:362 , GLU A:409 , HOH A:3404
BINDING SITE FOR RESIDUE CA A 2002
3
AC3
SOFTWARE
ASP A:136 , PRO A:137 , ASN A:211 , ILE A:212 , HOH A:3061
BINDING SITE FOR RESIDUE CA A 2003
4
AC4
SOFTWARE
VAL A:946 , ALA A:969 , ASP A:980 , ASP A:982 , ASP A:985
BINDING SITE FOR RESIDUE CA A 2004
5
AC5
SOFTWARE
ASP A:782 , PRO A:783 , ASP A:786 , ASP A:807 , LEU A:808 , ASP A:990
BINDING SITE FOR RESIDUE CA A 2005
6
AC6
SOFTWARE
ASP A:782 , ASP A:786 , ASP A:990 , VAL A:991 , GLN A:999 , HOH A:3199
BINDING SITE FOR RESIDUE CA A 2006
7
AC7
SOFTWARE
GLY A:526 , LEU A:529 , TRP A:565 , LEU A:594 , GLU A:597 , ARG A:598 , HOH A:3163
BINDING SITE FOR RESIDUE GOL A 3001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1ug9a1 (A:274-686)
2a: SCOP_d1ug9a3 (A:776-1020)
3a: SCOP_d1ug9a2 (A:687-775)
4a: SCOP_d1ug9a4 (A:2-273)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Bacterial glucoamylase C-terminal domain-like
(4)
Protein domain
:
Glucodextranase, domain A
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
1a
d1ug9a1
A:274-686
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
CBD9-like
(9)
Family
:
Glucodextranase, domain C
(2)
Protein domain
:
Glucodextranase, domain C
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
2a
d1ug9a3
A:776-1020
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Glucodextranase, domain B
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
3a
d1ug9a2
A:687-775
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
Bacterial glucoamylase N-terminal domain-like
(4)
Protein domain
:
Glucodextranase, domain N
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
4a
d1ug9a4
A:2-273
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1ug9A02 (A:274-687)
2a: CATH_1ug9A01 (A:2-273)
3a: CATH_1ug9A04 (A:774-938,A:939-1020)
4a: CATH_1ug9A03 (A:688-773)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.10, no name defined]
(67)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
1a
1ug9A02
A:274-687
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
[code=2.70.98.10, no name defined]
(116)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
2a
1ug9A01
A:2-273
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1190, no name defined]
(5)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
3a
1ug9A04
A:774-938,A:939-1020
Homologous Superfamily
:
E-set domains of sugar-utilizing enzymes; domain 3
(3)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
4a
1ug9A03
A:688-773
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_15_1ug9A01 (A:281-956)
2a: PFAM_DUF2223_1ug9A02 (A:776-1018)
3a: PFAM_Glucodextran_B_1ug9A03 (A:692-775)
4a: PFAM_Glucodextran_N_1ug9A04 (A:5-271)
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Glyco_hydro_15
(4)
Arthrobacter globiformis
(2)
1a
Glyco_hydro_15-1ug9A01
A:281-956
Clan
:
no clan defined [family: DUF2223]
(2)
Family
:
DUF2223
(2)
Arthrobacter globiformis
(2)
2a
DUF2223-1ug9A02
A:776-1018
Clan
:
no clan defined [family: Glucodextran_B]
(2)
Family
:
Glucodextran_B
(2)
Arthrobacter globiformis
(2)
3a
Glucodextran_B-1ug9A03
A:692-775
Clan
:
no clan defined [family: Glucodextran_N]
(4)
Family
:
Glucodextran_N
(4)
Arthrobacter globiformis
(2)
4a
Glucodextran_N-1ug9A04
A:5-271
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Asymmetric Unit 1
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Asym.Unit (168 KB)
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