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1UEL
Asym. Unit
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Asym.Unit (753 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPLEXED WITH UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A
Authors
:
K. Fujiwara, T. Tenno, J. G. Jee, K. Sugasawa, I. Ohki, C. Kojima, H. Tochio, H. Hiroaki, H. Hanaoka, M. Shirakawa, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Ubl, Uim, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Gene Regulation/Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Fujiwara, T. Tenno, K. Sugasawa, J. G. Jee, I. Ohki, C. Kojima, H. Tochio, H. Hiroaki, F. Hanaoka, M. Shirakawa
Structure Of The Ubiquitin-Interacting Motif Of S5A Bound To The Ubiquitin-Like Domain Of Hr23B
J. Biol. Chem. V. 279 4760 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-79)
2: UIM (-|B:282-301)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RD23B_HUMAN
1-79
1
A:1-79
2
UIM
PS50330
Ubiquitin-interacting motif (UIM) domain profile.
PSMD4_HUMAN
211-230
282-301
1
-
B:282-301
[
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Exons
(7, 7)
Info
All Exons
Exon 1.1c (A:1-22)
Exon 1.3 (A:23-50)
Exon 1.4 (A:50-76)
Exon 1.5c (A:77-95)
Exon 2.7b (B:260-261)
Exon 2.7f (B:262-299)
Exon 2.8a (B:299-307)
View:
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5c
5: Boundary 1.5c/1.6
6: Boundary 2.6c/2.7b
7: Boundary 2.7b/2.7f
8: Boundary 2.7f/2.8a
9: Boundary 2.8a/2.10e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000358015
1c
ENSE00001861528
chr9:
110045560-110045976
417
RD23B_HUMAN
1-22
22
1
A:1-22
22
1.3
ENST00000358015
3
ENSE00001675036
chr9:
110062422-110062503
82
RD23B_HUMAN
23-50
28
1
A:23-50
28
1.4
ENST00000358015
4
ENSE00001703228
chr9:
110064316-110064395
80
RD23B_HUMAN
50-76
27
1
A:50-76
27
1.5c
ENST00000358015
5c
ENSE00000926767
chr9:
110068660-110068928
269
RD23B_HUMAN
77-166
90
1
A:77-95
19
1.6
ENST00000358015
6
ENSE00000926768
chr9:
110073963-110074018
56
RD23B_HUMAN
166-185
20
0
-
-
1.7
ENST00000358015
7
ENSE00000926769
chr9:
110081033-110081160
128
RD23B_HUMAN
185-227
43
0
-
-
1.8
ENST00000358015
8
ENSE00000926770
chr9:
110084264-110084399
136
RD23B_HUMAN
228-273
46
0
-
-
1.9
ENST00000358015
9
ENSE00000926771
chr9:
110086171-110086298
128
RD23B_HUMAN
273-315
43
0
-
-
1.10a
ENST00000358015
10a
ENSE00000718037
chr9:
110087115-110087285
171
RD23B_HUMAN
316-372
57
0
-
-
1.11a
ENST00000358015
11a
ENSE00001401087
chr9:
110091824-110094475
2652
RD23B_HUMAN
373-409
37
0
-
-
2.1a
ENST00000368884
1a
ENSE00001810732
chr1:
151227179-151227284
106
PSMD4_HUMAN
1-9
9
0
-
-
2.3a
ENST00000368884
3a
ENSE00001805475
chr1:
151234637-151234777
141
PSMD4_HUMAN
9-56
48
0
-
-
2.4b
ENST00000368884
4b
ENSE00001681068
chr1:
151236390-151236504
115
PSMD4_HUMAN
56-94
39
0
-
-
2.5a
ENST00000368884
5a
ENSE00001646100
chr1:
151237308-151237394
87
PSMD4_HUMAN
95-123
29
0
-
-
2.5e
ENST00000368884
5e
ENSE00001776519
chr1:
151237642-151237710
69
PSMD4_HUMAN
124-146
23
0
-
-
2.6c
ENST00000368884
6c
ENSE00002196941
chr1:
151237870-151238085
216
PSMD4_HUMAN
147-218
72
0
-
-
2.7b
ENST00000368884
7b
ENSE00001633563
chr1:
151238480-151238588
109
PSMD4_HUMAN
219-255
37
1
B:260-261
2
2.7f
ENST00000368884
7f
ENSE00001779012
chr1:
151238784-151238915
132
PSMD4_HUMAN
255-299
45
1
B:262-299
38
2.8a
ENST00000368884
8a
ENSE00001708925
chr1:
151238996-151239063
68
PSMD4_HUMAN
299-321
23
1
B:299-307
9
2.10e
ENST00000368884
10e
ENSE00001448199
chr1:
151239649-151239955
307
PSMD4_HUMAN
322-377
56
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1uela_ (A:)
2a: SCOP_d1uelb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1uela_
A:
Class
:
Peptides
(792)
Fold
:
Ubiquitin interacting motif (UIM)
(6)
Superfamily
:
Ubiquitin interacting motif (UIM)
(6)
Family
:
Ubiquitin interacting motif (UIM)
(6)
Protein domain
:
26s proteasome non-ATPase regulatory subunit 4 (s5a)
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1uelb_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1uelA00 (A:1-95)
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)
(
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
1uelA00
A:1-95
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_ubiquitin_1uelA01 (A:6-78)
2a: PFAM_UIM_1uelB01 (B:281-298)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
Ubiquitin
(279)
Family
:
ubiquitin
(99)
Homo sapiens (Human)
(67)
1a
ubiquitin-1uelA01
A:6-78
Clan
:
no clan defined [family: UIM]
(9)
Family
:
UIM
(9)
Homo sapiens (Human)
(9)
2a
UIM-1uelB01
B:281-298
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