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1UD1
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Asym.Unit (182 KB)
Biol.Unit 1 (175 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROGLYCININ MUTANT C88S
Authors
:
S. Utsumi, M. Adachi
Date
:
24 Apr 03 (Deposition) - 03 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Glycinin, Soybean, Trimer, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Adachi, E. Okuda, Y. Kaneda, A. Hashimoto, A. D. Shutov, C. Becker, S. Utsumi
Crystal Structures And Structural Stabilities Of The Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G And C88S.
J. Agric. Food Chem. V. 51 4633 2003
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(1, 3)
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1: 11S_SEED_STORAGE (A:297-313,B:297-313,C:297-313)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
11S_SEED_STORAGE
PS00305
11-S plant seed storage proteins signature.
GLYG1_SOYBN
310-332
3
A:297-313
B:297-313
C:297-313
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Exons
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SCOP Domains
(1, 6)
Info
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1a: SCOP_d1ud1a1 (A:10-248)
1b: SCOP_d1ud1a2 (A:297-470)
1c: SCOP_d1ud1b1 (B:10-248)
1d: SCOP_d1ud1b2 (B:297-470)
1e: SCOP_d1ud1c1 (C:10-248)
1f: SCOP_d1ud1c2 (C:297-470)
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All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Germin/Seed storage 7S protein
(34)
Protein domain
:
Seed storage 7S protein
(18)
Soybean (Glycine max), proglycinin [TaxId: 3847]
(3)
1a
d1ud1a1
A:10-248
1b
d1ud1a2
A:297-470
1c
d1ud1b1
B:10-248
1d
d1ud1b2
B:297-470
1e
d1ud1c1
C:10-248
1f
d1ud1c2
C:297-470
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CATH Domains
(1, 6)
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all CATH domains
1a: CATH_1ud1A02 (A:307-470)
1b: CATH_1ud1B02 (B:307-470)
1c: CATH_1ud1C02 (C:307-470)
1d: CATH_1ud1A01 (A:22-306)
1e: CATH_1ud1B01 (B:22-306)
1f: CATH_1ud1C01 (C:22-306)
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Class
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Mainly Beta
(13760)
Architecture
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Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Soybean (Glycine max)
(10)
1a
1ud1A02
A:307-470
1b
1ud1B02
B:307-470
1c
1ud1C02
C:307-470
1d
1ud1A01
A:22-306
1e
1ud1B01
B:22-306
1f
1ud1C01
C:22-306
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Pfam Domains
(1, 6)
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all PFAM domains
1a: PFAM_Cupin_1_1ud1C01 (C:304-453)
1b: PFAM_Cupin_1_1ud1C02 (C:304-453)
1c: PFAM_Cupin_1_1ud1C03 (C:304-453)
1d: PFAM_Cupin_1_1ud1C04 (C:304-453)
1e: PFAM_Cupin_1_1ud1C05 (C:304-453)
1f: PFAM_Cupin_1_1ud1C06 (C:304-453)
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Clan
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Cupin
(179)
Family
:
Cupin_1
(15)
Glycine max (Soybean) (Glycine hispida)
(5)
1a
Cupin_1-1ud1C01
C:304-453
1b
Cupin_1-1ud1C02
C:304-453
1c
Cupin_1-1ud1C03
C:304-453
1d
Cupin_1-1ud1C04
C:304-453
1e
Cupin_1-1ud1C05
C:304-453
1f
Cupin_1-1ud1C06
C:304-453
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