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1U7T
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ABAD/HSD10 WITH A BOUND INHIBITOR
Authors
:
C. R. Kissinger, P. A. Rejto, L. A. Pelletier, R. E. Showalter, J. E. Villafranca
Date
:
04 Aug 04 (Deposition) - 05 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Protein-Inhibitor Complex, Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. R. Kissinger, P. A. Rejto, L. A. Pelletier, J. A. Thomson, R. E. Showalter, M. A. Abreo, C. S. Agree, S. Margosiak, J. J. Meng, R. M. Aust, D. Vanderpool, B. Li, A. Tempczyk-Russell, J. E. Villafranca
Crystal Structure Of Human Abad/Hsd10 With A Bound Inhibitor: Implications For Design Of Alzheimer'S Disease Therapeutics
J. Mol. Biol. V. 342 943 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2a: 1-AZEPAN-1-YL-2-PHENYL-2-(4-THIOXO... (TDTa)
2b: 1-AZEPAN-1-YL-2-PHENYL-2-(4-THIOXO... (TDTb)
2c: 1-AZEPAN-1-YL-2-PHENYL-2-(4-THIOXO... (TDTc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
TDT
3
Ligand/Ion
1-AZEPAN-1-YL-2-PHENYL-2-(4-THIOXO-1,4-DIHYDRO-PYRAZOLO[3,4-D]PYRIMIDIN-5-YL)ETHANONE ADDUCT
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:17 , SER A:20 , GLY A:21 , LEU A:22 , ASP A:41 , LEU A:42 , ALA A:63 , ASP A:64 , VAL A:65 , CYS A:91 , ALA A:92 , GLY A:93 , ALA A:95 , VAL A:96 , ALA A:97 , VAL A:120 , THR A:153 , ALA A:154 , SER A:155 , GLN A:162 , VAL A:163 , GLN A:165 , TYR A:168 , LYS A:172 , PRO A:198 , GLY A:199 , LEU A:200 , PHE A:201 , THR A:203 , PRO A:204 , LEU A:205 , LEU A:206 , HOH A:504 , HOH A:530 , HOH A:565 , HOH A:567
BINDING SITE FOR RESIDUE TDT A 501
2
AC2
SOFTWARE
GLY B:17 , SER B:20 , GLY B:21 , LEU B:22 , ASP B:41 , LEU B:42 , ALA B:63 , ASP B:64 , VAL B:65 , CYS B:91 , ALA B:92 , GLY B:93 , THR B:153 , ALA B:154 , SER B:155 , TYR B:168 , LYS B:172 , PRO B:198 , GLY B:199 , PHE B:201 , THR B:203 , PRO B:204 , LEU B:206 , HOH B:506 , HOH B:524 , HOH B:543 , HOH B:551
BINDING SITE FOR RESIDUE NAD B 502
3
AC3
SOFTWARE
GLY C:17 , SER C:20 , GLY C:21 , LEU C:22 , ASP C:41 , ALA C:63 , ASP C:64 , VAL C:65 , CYS C:91 , ALA C:92 , GLY C:93 , ALA C:95 , ALA C:97 , VAL C:120 , THR C:153 , ALA C:154 , SER C:155 , GLN C:162 , VAL C:163 , GLN C:165 , TYR C:168 , LYS C:172 , PRO C:198 , GLY C:199 , LEU C:200 , PHE C:201 , THR C:203 , PRO C:204 , LEU C:205 , LEU C:206 , LEU C:209 , HOH C:507 , HOH C:509 , HOH C:538 , HOH C:545 , HOH C:552 , HOH C:556
BINDING SITE FOR RESIDUE TDT C 503
4
AC4
SOFTWARE
GLY D:17 , SER D:20 , GLY D:21 , LEU D:22 , ASP D:41 , LEU D:42 , ALA D:63 , ASP D:64 , VAL D:65 , CYS D:91 , ALA D:92 , GLY D:93 , ALA D:95 , VAL D:120 , THR D:153 , ALA D:154 , SER D:155 , GLN D:162 , VAL D:163 , GLN D:165 , TYR D:168 , LYS D:172 , PRO D:198 , GLY D:199 , LEU D:200 , PHE D:201 , THR D:203 , PRO D:204 , LEU D:205 , SER D:208 , LEU D:209 , HOH D:526 , HOH D:544 , HOH D:561 , HOH D:570 , HOH D:571 , HOH D:575
BINDING SITE FOR RESIDUE TDT D 504
[
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SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015987 (L122V, chain A/B/C/D, )
2: VAR_015988 (R130C, chain A/B/C/D, )
3: VAR_032093 (N247S, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015987
L
122
V
HCD2_HUMAN
Disease (MHBD deficiency)
28935476
A/B/C/D
L
122
V
2
UniProt
VAR_015988
R
130
C
HCD2_HUMAN
Disease (MHBD deficiency)
28935475
A/B/C/D
R
130
C
3
UniProt
VAR_032093
N
247
S
HCD2_HUMAN
Disease (MHBD deficiency)
---
A/B/C/D
N
247
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:155-183,B:155-183,C:155-183,D:15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
HCD2_HUMAN
155-183
4
A:155-183
B:155-183
C:155-183
D:155-183
[
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]
Exons
(6, 24)
Info
All Exons
Exon 1.1a (A:7-9 | B:7-9 | C:7-9 | D:7-9)
Exon 1.2 (A:10-64 | B:10-64 | C:10-64 | D:10...)
Exon 1.3a (A:65-119 | B:65-119 | C:65-119 | D...)
Exon 1.4a (A:120-162 | B:120-162 | C:120-162 ...)
Exon 1.5c (A:163-199 | B:163-199 | C:163-199 ...)
Exon 1.6b (A:199-261 | B:199-261 | C:199-261 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3a
4: Boundary 1.3a/1.4a
5: Boundary 1.4a/1.5c
6: Boundary 1.5c/1.6b
7: Boundary 1.6b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000168216
1a
ENSE00001038851
X:53461320-53461266
55
HCD2_HUMAN
1-9
9
4
A:7-9
B:7-9
C:7-9
D:7-9
3
3
3
3
1.2
ENST00000168216
2
ENSE00000846304
X:53460833-53460669
165
HCD2_HUMAN
10-64
55
4
A:10-64
B:10-64
C:10-64
D:10-64
55
55
55
55
1.3a
ENST00000168216
3a
ENSE00000671344
X:53459359-53459195
165
HCD2_HUMAN
65-119
55
4
A:65-119
B:65-119
C:65-119
D:65-119
55
55
55
55
1.4a
ENST00000168216
4a
ENSE00000671345
X:53459064-53458936
129
HCD2_HUMAN
120-162
43
4
A:120-162
B:120-162
C:120-162
D:120-162
43
43
43
43
1.5c
ENST00000168216
5c
ENSE00000671346
X:53458854-53458746
109
HCD2_HUMAN
163-199
37
4
A:163-199
B:163-199
C:163-199
D:163-199
37
37
37
37
1.6b
ENST00000168216
6b
ENSE00000846303
X:53458542-53458206
337
HCD2_HUMAN
199-261
63
4
A:199-261
B:199-261
C:199-261
D:199-261
63
63
63
63
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1u7ta_ (A:)
1b: SCOP_d1u7tb_ (B:)
1c: SCOP_d1u7tc_ (C:)
1d: SCOP_d1u7td_ (D:)
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(
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Type II 3-hydroxyacyl-CoA dehydrogenase
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1u7ta_
A:
1b
d1u7tb_
B:
1c
d1u7tc_
C:
1d
d1u7td_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1u7tA00 (A:7-261)
1b: CATH_1u7tB00 (B:7-261)
1c: CATH_1u7tC00 (C:7-261)
1d: CATH_1u7tD00 (D:7-261)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1u7tA00
A:7-261
1b
1u7tB00
B:7-261
1c
1u7tC00
C:7-261
1d
1u7tD00
D:7-261
[
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]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_1u7tD01 (D:11-187)
1b: PFAM_adh_short_1u7tD02 (D:11-187)
1c: PFAM_adh_short_1u7tD03 (D:11-187)
1d: PFAM_adh_short_1u7tD04 (D:11-187)
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)
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(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1u7tD01
D:11-187
1b
adh_short-1u7tD02
D:11-187
1c
adh_short-1u7tD03
D:11-187
1d
adh_short-1u7tD04
D:11-187
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Asym.Unit (162 KB)
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