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1U7B
Asym. Unit
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Asym.Unit (50 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HPCNA BOUND TO RESIDUES 331-350 OF THE FLAP ENDONUCLEASE-1 (FEN1)
Authors
:
J. B. Bruning, Y. Shamoo
Date
:
03 Aug 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Flap Endonuclease, Sliding Clamp, Dna Processing, Fen1, Pip- Box, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Bruning, Y. Shamoo
Structural And Thermodynamic Analysis Of Human Pcna With Peptides Derived From Dna Polymerase-Delta P66 Subunit And Flap Endonuclease-1.
Structure V. 12 2209 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071871 (S228I, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071871
S
228
I
PCNA_HUMAN
Disease (ATLD2)
---
A
S
228
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:34-57)
2: PCNA_2 (A:61-79)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_HUMAN
34-57
1
A:34-57
2
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_HUMAN
61-79
1
A:61-79
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Exons
(7, 7)
Info
All Exons
Exon 1.2 (B:336-348)
Exon 2.2b (A:1-74)
Exon 2.3 (A:74-107)
Exon 2.4 (A:107-129)
Exon 2.5 (A:130-194 (gaps))
Exon 2.6 (A:195-236)
Exon 2.7 (A:236-255)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
3: Boundary 2.1/2.2b
4: Boundary 2.2b/2.3
5: Boundary 2.3/2.4
6: Boundary 2.4/2.5
7: Boundary 2.5/2.6
8: Boundary 2.6/2.7
9: Boundary 2.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000305885
1
ENSE00001224079
chr11:
61560150-61560500
351
FEN1_HUMAN
-
0
0
-
-
1.2
ENST00000305885
2
ENSE00001327269
chr11:
61562813-61564708
1896
FEN1_HUMAN
1-387
387
1
B:336-348
13
2.1
ENST00000379160
1
ENSE00001480155
chr20:
5107272-5107146
127
PCNA_HUMAN
-
0
0
-
-
2.2b
ENST00000379160
2b
ENSE00001480145
chr20:
5100560-5100224
337
PCNA_HUMAN
1-74
74
1
A:1-74
74
2.3
ENST00000379160
3
ENSE00001747465
chr20:
5099512-5099415
98
PCNA_HUMAN
74-107
34
1
A:74-107
34
2.4
ENST00000379160
4
ENSE00001693283
chr20:
5099323-5099256
68
PCNA_HUMAN
107-129
23
1
A:107-129
23
2.5
ENST00000379160
5
ENSE00000906721
chr20:
5098310-5098116
195
PCNA_HUMAN
130-194
65
1
A:130-194 (gaps)
65
2.6
ENST00000379160
6
ENSE00000906720
chr20:
5096218-5096095
124
PCNA_HUMAN
195-236
42
1
A:195-236
42
2.7
ENST00000379160
7
ENSE00000906719
chr20:
5096008-5095599
410
PCNA_HUMAN
236-261
26
1
A:236-255
20
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1u7ba1 (A:1-126)
1b: SCOP_d1u7ba2 (A:127-255)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1u7ba1
A:1-126
1b
d1u7ba2
A:127-255
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1u7bA00 (A:1-255)
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Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Human (Homo sapiens)
(10)
1a
1u7bA00
A:1-255
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_PCNA_C_1u7bA01 (A:127-254)
2a: PFAM_PCNA_N_1u7bA02 (A:1-125)
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Clan
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DNA_clamp
(33)
Family
:
PCNA_C
(23)
Homo sapiens (Human)
(9)
1a
PCNA_C-1u7bA01
A:127-254
Family
:
PCNA_N
(25)
Homo sapiens (Human)
(9)
2a
PCNA_N-1u7bA02
A:1-125
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