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1TVR
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
HIV-1 RT/9-CL TIBO
Authors
:
K. Das, J. Ding, Y. Hsiou, E. Arnold
Date
:
16 Apr 96 (Deposition) - 12 Mar 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aids, Polyprotein, Hydrolase, Aspartyl Protease, Endonuclease, Rna-Directed Dna Polymerase, 3Hiv-1 Rt/9-Cl Tibo
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Das, J. Ding, Y. Hsiou, A. D. Clark Jr. , H. Moereels, L. Koymans, K. Andries, R. Pauwels, P. A. Janssen, P. L. Boyer, P. Clark, R. H. Smith Jr. , M. B. Kroeger Smith, C. J. Michejda, S. H. Hughes, E. Arnold
Crystal Structures Of 8-Cl And 9-Cl Tibo Complexed With Wild-Type Hiv-1 Rt And 8-Cl Tibo Complexed With The Tyr181Cys Hiv-1 Rt Drug-Resistant Mutant.
J. Mol. Biol. V. 264 1085 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 4-CHLORO-8-METHYL-7-(3-METHYL-BUT-... (TB9a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TB9
1
Ligand/Ion
4-CHLORO-8-METHYL-7-(3-METHYL-BUT-2-ENYL)-6,7,8,9-TETRAHYDRO-2H-2,7,9A-TRIAZA-BENZO[CD]AZULENE-1-THIONE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:100 , LYS A:101 , VAL A:106 , VAL A:179 , ILE A:180 , TYR A:181 , TYR A:188 , TRP A:229 , LEU A:234 , HIS A:235 , TYR A:318
BINDING SITE FOR RESIDUE TB9 A 600
[
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (K172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
K
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-557)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-557
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1tvra1 (A:430-558)
2a: SCOP_d1tvra2 (A:1-429)
2b: SCOP_d1tvrb_ (B:)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d1tvra1
A:430-558
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d1tvra2
A:1-429
2b
d1tvrb_
B:
[
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1tvrB02 (B:95-115,B:157-238)
1b: CATH_1tvrA02 (A:91-115,A:157-225)
1c: CATH_1tvrA03 (A:226-319)
1d: CATH_1tvrB03 (B:239-316)
1e: CATH_1tvrA04 (A:320-426)
1f: CATH_1tvrB04 (B:317-426)
2a: CATH_1tvrA05 (A:427-558)
3a: CATH_1tvrB01 (B:1-94,B:116-156)
3b: CATH_1tvrA01 (A:1-90,A:116-156)
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(
)
(
)
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus type 1 (clone 12). Organism_taxid: 11679.Strain: bh10. Cell_line: 293.
(1)
1a
1tvrB02
B:95-115,B:157-238
1b
1tvrA02
A:91-115,A:157-225
1c
1tvrA03
A:226-319
1d
1tvrB03
B:239-316
1e
1tvrA04
A:320-426
1f
1tvrB04
B:317-426
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus type 1 (clone 12). Organism_taxid: 11679.Strain: bh10. Cell_line: 293.
(1)
2a
1tvrA05
A:427-558
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus type 1 (clone 12). Organism_taxid: 11679.Strain: bh10. Cell_line: 293.
(1)
3a
1tvrB01
B:1-94,B:116-156
3b
1tvrA01
A:1-90,A:116-156
[
close CATH info
]
Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_RNase_H_1tvrA01 (A:435-557)
2a: PFAM_RVT_1_1tvrB01 (B:63-234)
2b: PFAM_RVT_1_1tvrB02 (B:63-234)
3a: PFAM_RVT_connect_1tvrB03 (B:317-419)
3b: PFAM_RVT_connect_1tvrB04 (B:317-419)
4a: PFAM_RVT_thumb_1tvrB05 (B:238-307)
4b: PFAM_RVT_thumb_1tvrB06 (B:238-307)
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)
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)
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)
(
)
Organisms
(
)
(
)
Clan
:
RNase_H
(288)
Family
:
RNase_H
(128)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(28)
1a
RNase_H-1tvrA01
A:435-557
Clan
:
RdRP
(210)
Family
:
RVT_1
(95)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
2a
RVT_1-1tvrB01
B:63-234
2b
RVT_1-1tvrB02
B:63-234
Clan
:
no clan defined [family: RVT_connect]
(84)
Family
:
RVT_connect
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
3a
RVT_connect-1tvrB03
B:317-419
3b
RVT_connect-1tvrB04
B:317-419
Clan
:
no clan defined [family: RVT_thumb]
(84)
Family
:
RVT_thumb
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
4a
RVT_thumb-1tvrB05
B:238-307
4b
RVT_thumb-1tvrB06
B:238-307
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