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1TTT
Asym. Unit
Info
Asym.Unit (324 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (108 KB)
Biol.Unit 3 (108 KB)
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(1)
Title
:
PHE-TRNA, ELONGATION FACTOR EF-TU:GDPNP TERNARY COMPLEX
Authors
:
P. Nissen, M. Kjeldgaard, S. Thirup, G. Polekhina, L. Reshetnikova, B. F. C. Clark, J. Nyborg
Date
:
16 Nov 95 (Deposition) - 23 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Protein Synthesis, Ef-Tu, Trna, Ribosome, 1Eft, 4Tna, Peptide Elongation Ribonucleoprotein, Complex (Elongation Factor-Trna), Complex (Elongation Factor-Trna) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Nissen, M. Kjeldgaard, S. Thirup, G. Polekhina, L. Reshetnikova, B. F. Clark, J. Nyborg
Crystal Structure Of The Ternary Complex Of Phe-Trnaphe, Ef-Tu, And A Gtp Analog.
Science V. 270 1464 1995
(for further references see the
PDB file header
)
[
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Hetero Components
(14, 54)
Info
All Hetero Components
01a: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAa)
01b: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAb)
01c: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAc)
02a: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGa)
02b: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGb)
02c: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGc)
03a: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCa)
03b: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCb)
03c: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCc)
03d: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCd)
03e: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCe)
03f: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCf)
04a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
04b: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUb)
04c: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUc)
05a: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGa)
05b: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGb)
05c: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGc)
06a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
06b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
06c: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPc)
07a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
07b: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ub)
07c: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Uc)
07d: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ud)
07e: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ue)
07f: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Uf)
08a: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Ga)
08b: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Gb)
08c: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Gc)
09a: MAGNESIUM ION (MGa)
09b: MAGNESIUM ION (MGb)
09c: MAGNESIUM ION (MGc)
09d: MAGNESIUM ION (MGd)
09e: MAGNESIUM ION (MGe)
09f: MAGNESIUM ION (MGf)
10a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
10b: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCb)
10c: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCc)
11a: O2'-METHYLGUANOSINE-5'-MONOPHOSPHA... (OMGa)
11b: O2'-METHYLGUANOSINE-5'-MONOPHOSPHA... (OMGb)
11c: O2'-METHYLGUANOSINE-5'-MONOPHOSPHA... (OMGc)
12a: PHENYLALANINE (PHEa)
12b: PHENYLALANINE (PHEb)
12c: PHENYLALANINE (PHEc)
13a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
13b: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUb)
13c: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUc)
13d: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUd)
13e: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUe)
13f: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUf)
14a: 4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-... (YYGa)
14b: 4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-... (YYGb)
14c: 4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-... (YYGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1MA
3
Mod. Nucleotide
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2
2MG
3
Mod. Nucleotide
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3
5MC
6
Mod. Nucleotide
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4
5MU
3
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
5
7MG
3
Mod. Nucleotide
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6
GNP
3
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
7
H2U
6
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
8
M2G
3
Mod. Nucleotide
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
9
MG
6
Ligand/Ion
MAGNESIUM ION
10
OMC
3
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
11
OMG
3
Mod. Nucleotide
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
12
PHE
3
Mod. Amino Acid
PHENYLALANINE
13
PSU
6
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
14
YYG
3
Mod. Nucleotide
4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:25 , ASP A:51 , THR A:62 , GNP A:406 , HOH A:410
BINDING SITE FOR RESIDUE MG A 407
2
AC2
SOFTWARE
THR B:25 , ASP B:51 , THR B:62 , GNP B:406 , HOH B:409
BINDING SITE FOR RESIDUE MG B 407
3
AC3
SOFTWARE
THR C:25 , TYR C:47 , ASP C:51 , THR C:62 , GNP C:406
BINDING SITE FOR RESIDUE MG C 407
4
AC4
SOFTWARE
HIS A:67 , GLU A:226 , THR A:239 , GLU A:271 , MET A:272 , HIS A:273 , ARG A:274 , ASN A:285 , VAL A:286 , A D:76
BINDING SITE FOR RESIDUE PHE D 77
5
AC5
SOFTWARE
HIS B:67 , GLU B:226 , THR B:239 , GLU B:271 , MET B:272 , HIS B:273 , ARG B:274 , ASN B:285 , VAL B:286 , A E:76
BINDING SITE FOR RESIDUE PHE E 77
6
AC6
SOFTWARE
HIS C:67 , GLU C:226 , THR C:239 , GLU C:271 , MET C:272 , HIS C:273 , ARG C:274 , ASN C:285 , VAL C:286 , A F:76
BINDING SITE FOR RESIDUE PHE F 77
7
AC7
SOFTWARE
VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , MG A:407 , HOH A:410
BINDING SITE FOR RESIDUE GNP A 406
8
AC8
SOFTWARE
VAL B:20 , ASP B:21 , HIS B:22 , GLY B:23 , LYS B:24 , THR B:25 , THR B:26 , TYR B:47 , ILE B:61 , THR B:62 , GLY B:84 , ASN B:136 , LYS B:137 , ASP B:139 , MET B:140 , SER B:174 , ALA B:175 , LEU B:176 , MG B:407 , HOH B:409
BINDING SITE FOR RESIDUE GNP B 406
9
AC9
SOFTWARE
VAL C:20 , ASP C:21 , HIS C:22 , GLY C:23 , LYS C:24 , THR C:25 , THR C:26 , TYR C:47 , ILE C:61 , THR C:62 , GLY C:84 , ASN C:136 , LYS C:137 , ASP C:139 , MET C:140 , SER C:174 , ALA C:175 , LEU C:176 , MG C:407
BINDING SITE FOR RESIDUE GNP C 406
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:51-66,B:51-66,C:51-66)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU_THEAQ
52-67
3
A:51-66
B:51-66
C:51-66
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d1ttta2 (A:314-405)
1b: SCOP_d1tttb2 (B:313-405)
1c: SCOP_d1tttc2 (C:313-405)
2a: SCOP_d1ttta1 (A:213-313)
2b: SCOP_d1tttb1 (B:213-312)
2c: SCOP_d1tttc1 (C:213-312)
3a: SCOP_d1ttta3 (A:1-212)
3b: SCOP_d1tttb3 (B:1-212)
3c: SCOP_d1tttc3 (C:1-212)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor Tu (EF-Tu)
(17)
Thermus aquaticus [TaxId: 271]
(4)
1a
d1ttta2
A:314-405
1b
d1tttb2
B:313-405
1c
d1tttc2
C:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor Tu (EF-Tu), domain 2
(17)
Thermus aquaticus [TaxId: 271]
(4)
2a
d1ttta1
A:213-313
2b
d1tttb1
B:213-312
2c
d1tttc1
C:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor Tu (EF-Tu), N-terminal (G) domain
(19)
Thermus aquaticus [TaxId: 271]
(4)
3a
d1ttta3
A:1-212
3b
d1tttb3
B:1-212
3c
d1tttc3
C:1-212
[
close SCOP info
]
CATH Domains
(2, 9)
Info
all CATH domains
1a: CATH_1tttA01 (A:1-213)
1b: CATH_1tttB01 (B:1-213)
1c: CATH_1tttC01 (C:1-213)
2a: CATH_1tttA03 (A:311-404)
2b: CATH_1tttB03 (B:311-404)
2c: CATH_1tttC03 (C:311-404)
2d: CATH_1tttA02 (A:216-307)
2e: CATH_1tttB02 (B:216-307)
2f: CATH_1tttC02 (C:216-307)
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
1a
1tttA01
A:1-213
1b
1tttB01
B:1-213
1c
1tttC01
C:1-213
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
[unclassified]
(4)
2a
1tttA03
A:311-404
2b
1tttB03
B:311-404
2c
1tttC03
C:311-404
2d
1tttA02
A:216-307
2e
1tttB02
B:216-307
2f
1tttC02
C:216-307
[
close CATH info
]
Pfam Domains
(3, 9)
Info
all PFAM domains
1a: PFAM_GTP_EFTU_1tttC01 (C:9-212)
1b: PFAM_GTP_EFTU_1tttC02 (C:9-212)
1c: PFAM_GTP_EFTU_1tttC03 (C:9-212)
2a: PFAM_GTP_EFTU_D2_1tttC04 (C:235-305)
2b: PFAM_GTP_EFTU_D2_1tttC05 (C:235-305)
2c: PFAM_GTP_EFTU_D2_1tttC06 (C:235-305)
3a: PFAM_GTP_EFTU_D3_1tttC07 (C:309-404)
3b: PFAM_GTP_EFTU_D3_1tttC08 (C:309-404)
3c: PFAM_GTP_EFTU_D3_1tttC09 (C:309-404)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Thermus aquaticus
(3)
1a
GTP_EFTU-1tttC01
C:9-212
1b
GTP_EFTU-1tttC02
C:9-212
1c
GTP_EFTU-1tttC03
C:9-212
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Thermus aquaticus
(3)
2a
GTP_EFTU_D2-1tttC04
C:235-305
2b
GTP_EFTU_D2-1tttC05
C:235-305
2c
GTP_EFTU_D2-1tttC06
C:235-305
Clan
:
no clan defined [family: GTP_EFTU_D3]
(11)
Family
:
GTP_EFTU_D3
(11)
Thermus aquaticus
(3)
3a
GTP_EFTU_D3-1tttC07
C:309-404
3b
GTP_EFTU_D3-1tttC08
C:309-404
3c
GTP_EFTU_D3-1tttC09
C:309-404
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