1TTT | PTR012 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   PHE-TRNA, ELONGATION FACTOR EF-TU:GDPNP TERNARY COMPLEX

Authors :   P. Nissen, M. Kjeldgaard, S. Thirup, G. Polekhina, L. Reshetnikova, B. F. C. Clark, J. Nyborg

Date :   16 Nov 95 (Deposition) - 23 Dec 96 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,E  (1x)
Biol. Unit 3: C,F  (1x)

Keywords :   Protein Synthesis, Ef-Tu, Trna, Ribosome, 1Eft, 4Tna, Peptide Elongation Ribonucleoprotein, Complex (Elongation Factor-Trna), Complex (Elongation Factor-Trna) Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Nissen, M. Kjeldgaard, S. Thirup, G. Polekhina, L. Reshetnikova, B. F. Clark, J. Nyborg
Crystal Structure Of The Ternary Complex Of Phe-Trnaphe, Ef-Tu, And A Gtp Analog.
Science V. 270 1464 1995
PubMed-ID: 7491491
(for further references see the PDB file header)

Molecule 1 - TRANSFER RIBONUCLEIC ACID (YEAST, PHE)
	Chains	:	D, E, F
	Engineered	:	YES
	Other Details	:	TERNARY COMPLEX WITH GUANOSINE-5'-(BETA,GAMMA-IMIDO) TRIPHOSPHATE (GDPNP)
	Synthetic	:	YES

Molecule 2 - OF ELONGATION FACTOR TU (EF-TU)
	Atcc	:	25104
	Chains	:	A, B, C
	Organism Scientific	:	THERMUS AQUATICUS
	Organism Taxid	:	271
	Strain	:	YT-1

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B			E
Biological Unit 3 (1x)	:			C			F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (14, 54)

No.	Name	Count	Type	Full Name
1	1MA	3	Mod. Nucleotide	6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2	2MG	3	Mod. Nucleotide	2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3	5MC	6	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4	5MU	3	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
5	7MG	3	Mod. Nucleotide	7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6	GNP	3	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
7	H2U	6	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
8	M2G	3	Mod. Nucleotide	N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
9	MG	6	Ligand/Ion	MAGNESIUM ION
10	OMC	3	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
11	OMG	3	Mod. Nucleotide	O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
12	PHE	3	Mod. Amino Acid	PHENYLALANINE
13	PSU	6	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE
14	YYG	3	Mod. Nucleotide	4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER

Biological Unit 1 (13, 16)

No.	Name	Count	Type	Full Name
1	1MA	1	Mod. Nucleotide	6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2	2MG	1	Mod. Nucleotide	2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3	5MC	2	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4	5MU	1	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
5	7MG	1	Mod. Nucleotide	7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
7	H2U	2	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
8	M2G	1	Mod. Nucleotide	N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
9	MG	-1	Ligand/Ion	MAGNESIUM ION
10	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
11	OMG	1	Mod. Nucleotide	O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
12	PHE	1	Mod. Amino Acid	PHENYLALANINE
13	PSU	2	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE
14	YYG	1	Mod. Nucleotide	4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER

Biological Unit 2 (13, 16)

No.	Name	Count	Type	Full Name
1	1MA	1	Mod. Nucleotide	6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2	2MG	1	Mod. Nucleotide	2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3	5MC	2	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4	5MU	1	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
5	7MG	1	Mod. Nucleotide	7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
7	H2U	2	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
8	M2G	1	Mod. Nucleotide	N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
9	MG	-1	Ligand/Ion	MAGNESIUM ION
10	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
11	OMG	1	Mod. Nucleotide	O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
12	PHE	1	Mod. Amino Acid	PHENYLALANINE
13	PSU	2	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE
14	YYG	1	Mod. Nucleotide	4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER

Biological Unit 3 (13, 16)

No.	Name	Count	Type	Full Name
1	1MA	1	Mod. Nucleotide	6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2	2MG	1	Mod. Nucleotide	2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3	5MC	2	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4	5MU	1	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
5	7MG	1	Mod. Nucleotide	7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
7	H2U	2	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
8	M2G	1	Mod. Nucleotide	N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
9	MG	-1	Ligand/Ion	MAGNESIUM ION
10	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
11	OMG	1	Mod. Nucleotide	O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
12	PHE	1	Mod. Amino Acid	PHENYLALANINE
13	PSU	2	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE
14	YYG	1	Mod. Nucleotide	4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:25 , ASP A:51 , THR A:62 , GNP A:406 , HOH A:410	BINDING SITE FOR RESIDUE MG A 407
2	AC2	SOFTWARE	THR B:25 , ASP B:51 , THR B:62 , GNP B:406 , HOH B:409	BINDING SITE FOR RESIDUE MG B 407
3	AC3	SOFTWARE	THR C:25 , TYR C:47 , ASP C:51 , THR C:62 , GNP C:406	BINDING SITE FOR RESIDUE MG C 407
4	AC4	SOFTWARE	HIS A:67 , GLU A:226 , THR A:239 , GLU A:271 , MET A:272 , HIS A:273 , ARG A:274 , ASN A:285 , VAL A:286 , A D:76	BINDING SITE FOR RESIDUE PHE D 77
5	AC5	SOFTWARE	HIS B:67 , GLU B:226 , THR B:239 , GLU B:271 , MET B:272 , HIS B:273 , ARG B:274 , ASN B:285 , VAL B:286 , A E:76	BINDING SITE FOR RESIDUE PHE E 77
6	AC6	SOFTWARE	HIS C:67 , GLU C:226 , THR C:239 , GLU C:271 , MET C:272 , HIS C:273 , ARG C:274 , ASN C:285 , VAL C:286 , A F:76	BINDING SITE FOR RESIDUE PHE F 77
7	AC7	SOFTWARE	VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , MG A:407 , HOH A:410	BINDING SITE FOR RESIDUE GNP A 406
8	AC8	SOFTWARE	VAL B:20 , ASP B:21 , HIS B:22 , GLY B:23 , LYS B:24 , THR B:25 , THR B:26 , TYR B:47 , ILE B:61 , THR B:62 , GLY B:84 , ASN B:136 , LYS B:137 , ASP B:139 , MET B:140 , SER B:174 , ALA B:175 , LEU B:176 , MG B:407 , HOH B:409	BINDING SITE FOR RESIDUE GNP B 406
9	AC9	SOFTWARE	VAL C:20 , ASP C:21 , HIS C:22 , GLY C:23 , LYS C:24 , THR C:25 , THR C:26 , TYR C:47 , ILE C:61 , THR C:62 , GLY C:84 , ASN C:136 , LYS C:137 , ASP C:139 , MET C:140 , SER C:174 , ALA C:175 , LEU C:176 , MG C:407	BINDING SITE FOR RESIDUE GNP C 406

(no "SS Bond" information available for 1TTT)

(no "Cis Peptide Bond" information available for 1TTT)

(no "SAP(SNP)/Variant" information available for 1TTT)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFTU_THEAQ	52-67	3	A:51-66 B:51-66 C:51-66

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFTU_THEAQ	52-67	1	A:51-66 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFTU_THEAQ	52-67	1	- B:51-66 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFTU_THEAQ	52-67	1	- - C:51-66

(no "Exon" information available for 1TTT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:405
 aligned with EFTU_THEAQ | Q01698 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:405
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401     
           EFTU_THEAQ     2 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ttta3 A:1-212 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                                 d1ttta1 A:213-313 Elongation factor Tu (EF-Tu), domain 2                                             d1ttta2 A:314-405 Elongation factor Tu (EF-Tu)                                               SCOP domains
               CATH domains 1tttA01 A:1-213 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 --1tttA02 A:216-307 Translation factors                                                       ---1tttA03 A:311-404 Translation factors                                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee.......hhhhhhhhhhhhhhh........hhhh...hhhhh.......eeeeee...eeeeeee....hhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh.....eeeeee.hhh...hhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh........hhhhhhhhhhhhhhh.............eeee.eeeee...eeeeeeeeee.eee...eeeee......eeeeeeeee.......eee...eeeeee....hhh.....eee.........eeeeeeee..hhh...........eeeeee..eeeeeeeee...........eeeeeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ttt A   1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain B from PDB  Type:PROTEIN  Length:405
 aligned with EFTU_THEAQ | Q01698 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:405
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401     
           EFTU_THEAQ     2 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1tttb3 B:1-212 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                                 d1tttb1 B:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1tttb2 B:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1tttB01 B:1-213 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 --1tttB02 B:216-307 Translation factors                                                       ---1tttB03 B:311-404 Translation factors                                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee.......hhhhhhhhhhhhhhh........hhh....hhhhhh......eeeeee...eeeeeee....hhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhh........eee..hhhhhhhhhh.........hhhhhhhhhhhhhhh.............eeee.eeeee...eeeeeeeeee.eee...eeeee......eeeeeeeee.......eee...eeeeee....hhh.....eee.........eeeeeeee..hhh.............eeee..eeeeeeeee..............eeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ttt B   1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain C from PDB  Type:PROTEIN  Length:405
 aligned with EFTU_THEAQ | Q01698 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:405
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401     
           EFTU_THEAQ     2 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1tttc3 C:1-212 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                                 d1tttc1 C:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1tttc2 C:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1tttC01 C:1-213 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 --1tttC02 C:216-307 Translation factors                                                       ---1tttC03 C:311-404 Translation factors                                                         - CATH domains
           Pfam domains (1) --------GTP_EFTU-1tttC01 C:9-212                                                                                                                                                                                    ----------------------GTP_EFTU_D2-1tttC04 C:235-305                                          ---GTP_EFTU_D3-1tttC07 C:309-404                                                                   - Pfam domains (1)
           Pfam domains (2) --------GTP_EFTU-1tttC02 C:9-212                                                                                                                                                                                    ----------------------GTP_EFTU_D2-1tttC05 C:235-305                                          ---GTP_EFTU_D3-1tttC08 C:309-404                                                                   - Pfam domains (2)
           Pfam domains (3) --------GTP_EFTU-1tttC03 C:9-212                                                                                                                                                                                    ----------------------GTP_EFTU_D2-1tttC06 C:235-305                                          ---GTP_EFTU_D3-1tttC09 C:309-404                                                                   - Pfam domains (3)
         Sec.struct. author .........eeeeeeee......hhhhhhhhhhhhhhh........hhhh...hhhhhh......eeeeee...eeeeeee....hhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhh.....eeeeee.hhh...hhhhhhhhhhhhhhhhhh........eee..hhhhhhhhhhh........hhhhhhhhhhhhhhhh............eeee.eeeee...eeeeeeeeee.eee...eeeee......eeee............eee...eeeeee....hhh.....eeee........eeeeeeee..hhh.............eeee..eeeeeeeee...........eeeeeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ttt C   1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain D from PDB  Type:RNA  Length:76
                                                                                                            
                 1ttt D   1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA  76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YYG    |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU

Chain E from PDB  Type:RNA  Length:76
                                                                                                            
                 1ttt E   1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA  76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YYG    |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU

Chain F from PDB  Type:RNA  Length:76
                                                                                                            
                 1ttt F   1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA  76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YYG    |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

[unclassified] (24)

1a	1tttA01	A:1-213
1b	1tttB01	B:1-213
1c	1tttC01	C:1-213

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Elongation Factor Tu (Ef-tu); domain 3 (323)

Homologous Superfamily: Translation factors (223)

[unclassified] (4)

2a	1tttA03	A:311-404
2b	1tttB03	B:311-404
2c	1tttC03	C:311-404
2d	1tttA02	A:216-307
2e	1tttB02	B:216-307
2f	1tttC02	C:216-307

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: GTP_EFTU (39)

Thermus aquaticus (3)

1a	GTP_EFTU-1tttC01	C:9-212
1b	GTP_EFTU-1tttC02	C:9-212
1c	GTP_EFTU-1tttC03	C:9-212

Clan: no clan defined [family: GTP_EFTU_D2] (39)

Family: GTP_EFTU_D2 (39)

Thermus aquaticus (3)

2a	GTP_EFTU_D2-1tttC04	C:235-305
2b	GTP_EFTU_D2-1tttC05	C:235-305
2c	GTP_EFTU_D2-1tttC06	C:235-305

Clan: no clan defined [family: GTP_EFTU_D3] (11)

Family: GTP_EFTU_D3 (11)

Thermus aquaticus (3)

3a	GTP_EFTU_D3-1tttC07	C:309-404
3b	GTP_EFTU_D3-1tttC08	C:309-404
3c	GTP_EFTU_D3-1tttC09	C:309-404

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (EFTU_THEAQ | Q01698)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric Unit
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	Cis Peptide Bonds
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	1ttt
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	EFTU_THEAQ \| Q01698	:	1b23 1eft 1h1u 1ipm 1ipo 1ipq 1ipr 1ipu 1l1u 1mj1 1ob5 1tui

(no "Related Entries Specified in the PDB File" available for 1TTT)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (14, 54)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

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