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1TL2
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
TACHYLECTIN-2 FROM TACHYPLEUS TRIDENTATUS (JAPANESE HORSESHOE CRAB)
Authors
:
H. -G. Beisel, S. Kawabata, S. Iwanaga, R. Huber, W. Bode
Date
:
14 Dec 98 (Deposition) - 15 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Animal Lectin, Horseshoe Crab, N-Acetylglucosamine, Beta- Propeller, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. G. Beisel, S. Kawabata, S. Iwanaga, R. Huber, W. Bode
Tachylectin-2: Crystal Structure Of A Specific Glcnac/Galnac-Binding Lectin Involved In The Innate Immunity Host Defense Of The Japanese Horseshoe Crab Tachypleus Tridentatus.
Embo J. V. 18 2313 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
1b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
1c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
1d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
1e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NDG
5
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:36 , LYS A:37 , GLY A:38 , TRP A:40 , ASP A:71 , ASP A:73 , ASN A:74 , TRP A:75 , MET A:76 , GLN A:178 , TYR A:213 , NDG A:241 , HOH A:258
BINDING SITE FOR RESIDUE NDG A 237
2
AC2
SOFTWARE
LYS A:24 , ASN A:27 , TRP A:28 , LEU A:29 , GLY A:224 , ASN A:225 , GLY A:226 , TRP A:228 , PHE A:231 , HOH A:252
BINDING SITE FOR RESIDUE NDG A 238
3
AC3
SOFTWARE
GLY A:130 , SER A:131 , GLY A:132 , TRP A:134 , ASN A:165 , ASN A:168 , TRP A:169 , LEU A:170 , HOH A:253 , HOH A:384
BINDING SITE FOR RESIDUE NDG A 239
4
AC4
SOFTWARE
GLY A:83 , ASN A:84 , GLY A:85 , TRP A:87 , ASP A:118 , ASP A:120 , ASN A:121 , TRP A:122 , ILE A:123 , HOH A:290
BINDING SITE FOR RESIDUE NDG A 240
5
AC5
SOFTWARE
GLY A:177 , GLN A:178 , GLY A:179 , TRP A:181 , ALA A:212 , ASN A:215 , TRP A:216 , LEU A:217 , NDG A:237 , HOH A:270 , HOH A:291 , HOH A:297 , HOH A:330 , HOH A:396
BINDING SITE FOR RESIDUE NDG A 241
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TAL2_TACTR_001 (V129V, chain A, )
2: VAR_TAL2_TACTR_002 (Y213Y, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TAL2_TACTR_001
*
I
148
V
TAL2_TACTR
---
---
A
V
129
V
2
UniProt
VAR_TAL2_TACTR_002
*
H
232
Y
TAL2_TACTR
---
---
A
Y
213
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1tl2a_ (A:)
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Protein Domains
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Tachylectin-2
(1)
Family
:
Tachylectin-2
(1)
Protein domain
:
Tachylectin-2
(1)
Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
(1)
1a
d1tl2a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1tl2A00 (A:2-236)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
5 Propellor
(21)
Topology
:
Tachylectin-2; Chain A
(21)
Homologous Superfamily
:
Tachylectin-2; Chain A
(1)
Tachypleus tridentatus. Organism_taxid: 6853
(1)
1a
1tl2A00
A:2-236
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Pfam Domains
(0, 0)
Info
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Chain A
Asymmetric Unit 1
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