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1TKX
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GW490745
Authors
:
J. Ren, A. L. Hopkins, D. I. Stuart, D. K. Stammers
Date
:
09 Jun 04 (Deposition) - 07 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hiv-1 Reverse Transcriptase, Aids, Nnrti, Gw490745, Drug Design, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Freeman, C. W. Andrews Iii, A. L. Hopkins, G. S. Lowell, L. T. Schaller, J. R. Cowan, S. S. Gonzales, G. W. Koszalka, R. J. Hazen, L. R. Boone, R. G. Ferris, K. L. Creech, G. B. Roberts, S. A. Short, K. Weaver, D. J. Reynolds, J. Milton, J. Ren, D. I. Stuart, D. K. Stammers, J. H. Chan
Design Of Non-Nucleoside Inhibitors Of Hiv-1 Reverse Transcriptase With Improved Drug Resistance Properties. 2.
J. Med. Chem. V. 47 5923 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
2a: 4-[(CYCLOPROPYLETHYNYL)OXY]-6-FLUO... (GWBa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
2
GWB
1
Ligand/Ion
4-[(CYCLOPROPYLETHYNYL)OXY]-6-FLUORO-3-ISOPROPYLQUINOLIN-2(1H)-ONE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:100 , LYS A:101 , LYS A:103 , VAL A:179 , TYR A:181 , TYR A:188 , TRP A:229 , LEU A:234 , HIS A:235 , TYR A:318 , GLU B:138
BINDING SITE FOR RESIDUE GWB A 999
[
close Site info
]
SAPs(SNPs)/Variants
(91, 163)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_POL_HV1H2_069 (M41L, chain A/B, )
02: VAR_POL_HV1H2_070 (E44A, chain A/B, )
03: VAR_POL_HV1H2_071 (E44D, chain A/B, )
04: VAR_POL_HV1H2_072 (P52R, chain A/B, )
05: VAR_POL_HV1H2_073 (N54D, chain A/B, )
06: VAR_POL_HV1H2_074 (A62V, chain A/B, )
07: VAR_POL_HV1H2_075 (K65R, chain A, )
08: VAR_POL_HV1H2_076 (D67A, chain B, )
09: VAR_POL_HV1H2_077 (D67E, chain B, )
10: VAR_POL_HV1H2_078 (D67G, chain B, )
11: VAR_POL_HV1H2_079 (D67N, chain B, )
12: VAR_POL_HV1H2_080 (D67S, chain B, )
13: VAR_POL_HV1H2_081 (S68G, chain B, )
14: VAR_POL_HV1H2_082 (S68N, chain B, )
15: VAR_POL_HV1H2_083 (S68Y, chain B, )
16: VAR_POL_HV1H2_084 (T69A, chain A/B, )
17: VAR_POL_HV1H2_085 (T69D, chain A/B, )
18: VAR_POL_HV1H2_086 (T69G, chain A/B, )
19: VAR_POL_HV1H2_087 (T69N, chain A/B, )
20: VAR_POL_HV1H2_088 (K70E, chain A/B, )
21: VAR_POL_HV1H2_089 (K70R, chain A/B, )
22: VAR_POL_HV1H2_090 (K70S, chain A/B, )
23: VAR_POL_HV1H2_091 (L74I, chain A/B, )
24: VAR_POL_HV1H2_092 (L74V, chain A/B, )
25: VAR_POL_HV1H2_093 (V75I, chain A/B, )
26: VAR_POL_HV1H2_094 (V75L, chain A/B, )
27: VAR_POL_HV1H2_095 (V75M, chain A/B, )
28: VAR_POL_HV1H2_096 (V75T, chain A/B, )
29: VAR_POL_HV1H2_097 (F77L, chain A/B, )
30: VAR_POL_HV1H2_098 (W88G, chain A/B, )
31: VAR_POL_HV1H2_099 (W88S, chain A/B, )
32: VAR_POL_HV1H2_100 (E89G, chain A, )
33: VAR_POL_HV1H2_101 (E89K, chain A, )
34: VAR_POL_HV1H2_102 (L92I, chain A, )
35: VAR_POL_HV1H2_103 (L100I, chain A/B, )
36: VAR_POL_HV1H2_104 (K101E, chain A/B, )
37: VAR_POL_HV1H2_105 (K101P, chain A/B, )
38: VAR_POL_HV1H2_106 (K101Q, chain A/B, )
39: VAR_POL_HV1H2_107 (K103E, chain A/B, )
40: VAR_POL_HV1H2_108 (K103N, chain A/B, )
41: VAR_POL_HV1H2_109 (K103R, chain A/B, )
42: VAR_POL_HV1H2_110 (V106A, chain A/B, )
43: VAR_POL_HV1H2_111 (V106I, chain A/B, )
44: VAR_POL_HV1H2_112 (V106M, chain A/B, )
45: VAR_POL_HV1H2_113 (V108I, chain A/B, )
46: VAR_POL_HV1H2_114 (Y115F, chain A/B, )
47: VAR_POL_HV1H2_115 (F116Y, chain A/B, )
48: VAR_POL_HV1H2_116 (V118I, chain A/B, )
49: VAR_POL_HV1H2_117 (P119S, chain A/B, )
50: VAR_POL_HV1H2_118 (I135L, chain A/B, )
51: VAR_POL_HV1H2_119 (I135M, chain A/B, )
52: VAR_POL_HV1H2_120 (I135T, chain A/B, )
53: VAR_POL_HV1H2_121 (E138K, chain A/B, )
54: VAR_POL_HV1H2_122 (Q145M, chain A/B, )
55: VAR_POL_HV1H2_123 (Q151M, chain A/B, )
56: VAR_POL_HV1H2_124 (S156A, chain A/B, )
57: VAR_POL_HV1H2_125 (P157S, chain A/B, )
58: VAR_POL_HV1H2_126 (Q161L, chain A/B, )
59: VAR_POL_HV1H2_127 (V179D, chain A/B, )
60: VAR_POL_HV1H2_128 (Y181C, chain A/B, )
61: VAR_POL_HV1H2_129 (M184I, chain A/B, )
62: VAR_POL_HV1H2_130 (M184T, chain A/B, )
63: VAR_POL_HV1H2_131 (M184V, chain A/B, )
64: VAR_POL_HV1H2_132 (Y188C, chain A/B, )
65: VAR_POL_HV1H2_133 (Y188H, chain A/B, )
66: VAR_POL_HV1H2_134 (Y188L, chain A/B, )
67: VAR_POL_HV1H2_135 (V189I, chain A/B, )
68: VAR_POL_HV1H2_136 (G190A, chain A/B, )
69: VAR_POL_HV1H2_137 (G190C, chain A/B, )
70: VAR_POL_HV1H2_138 (G190E, chain A/B, )
71: VAR_POL_HV1H2_139 (G190Q, chain A/B, )
72: VAR_POL_HV1H2_140 (G190S, chain A/B, )
73: VAR_POL_HV1H2_141 (G190T, chain A/B, )
74: VAR_POL_HV1H2_142 (G190V, chain A/B, )
75: VAR_POL_HV1H2_143 (H208Y, chain A/B, )
76: VAR_POL_HV1H2_144 (L210W, chain A/B, )
77: VAR_POL_HV1H2_145 (R211K, chain A/B, )
78: VAR_POL_HV1H2_146 (L214F, chain A, )
79: VAR_POL_HV1H2_147 (T215F, chain A, )
80: VAR_POL_HV1H2_148 (T215Y, chain A, )
81: VAR_POL_HV1H2_149 (K219E, chain A, )
82: VAR_POL_HV1H2_150 (K219Q, chain A, )
83: VAR_POL_HV1H2_151 (K219R, chain A, )
84: VAR_POL_HV1H2_152 (P225H, chain A, )
85: VAR_POL_HV1H2_153 (P236L, chain A/B, )
86: VAR_POL_HV1H2_154 (K238T, chain A/B, )
87: VAR_POL_HV1H2_155 (L283I, chain A/B, )
88: VAR_POL_HV1H2_156 (Y318F, chain A/B, )
89: VAR_POL_HV1H2_157 (G333D, chain A/B, )
90: VAR_POL_HV1H2_158 (G333E, chain A/B, )
91: VAR_POL_HV1H2_159 (T386I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_POL_HV1H2_069
*
M
628
L
POL_HV1H2
---
---
A/B
M
41
L
02
UniProt
VAR_POL_HV1H2_070
*
E
631
A
POL_HV1H2
---
---
A/B
E
44
A
03
UniProt
VAR_POL_HV1H2_071
*
E
631
D
POL_HV1H2
---
---
A/B
E
44
D
04
UniProt
VAR_POL_HV1H2_072
*
P
639
R
POL_HV1H2
---
---
A/B
P
52
R
05
UniProt
VAR_POL_HV1H2_073
*
N
641
D
POL_HV1H2
---
---
A/B
N
54
D
06
UniProt
VAR_POL_HV1H2_074
*
A
649
V
POL_HV1H2
---
---
A/B
A
62
V
07
UniProt
VAR_POL_HV1H2_075
*
K
652
R
POL_HV1H2
---
---
A
K
65
R
08
UniProt
VAR_POL_HV1H2_076
*
D
654
A
POL_HV1H2
---
---
B
D
67
A
09
UniProt
VAR_POL_HV1H2_077
*
D
654
E
POL_HV1H2
---
---
B
D
67
E
10
UniProt
VAR_POL_HV1H2_078
*
D
654
G
POL_HV1H2
---
---
B
D
67
G
11
UniProt
VAR_POL_HV1H2_079
*
D
654
N
POL_HV1H2
---
---
B
D
67
N
12
UniProt
VAR_POL_HV1H2_080
*
D
654
S
POL_HV1H2
---
---
B
D
67
S
13
UniProt
VAR_POL_HV1H2_081
*
S
655
G
POL_HV1H2
---
---
B
S
68
G
14
UniProt
VAR_POL_HV1H2_082
*
S
655
N
POL_HV1H2
---
---
B
S
68
N
15
UniProt
VAR_POL_HV1H2_083
*
S
655
Y
POL_HV1H2
---
---
B
S
68
Y
16
UniProt
VAR_POL_HV1H2_084
*
T
656
A
POL_HV1H2
---
---
A/B
T
69
A
17
UniProt
VAR_POL_HV1H2_085
*
T
656
D
POL_HV1H2
---
---
A/B
T
69
D
18
UniProt
VAR_POL_HV1H2_086
*
T
656
G
POL_HV1H2
---
---
A/B
T
69
G
19
UniProt
VAR_POL_HV1H2_087
*
T
656
N
POL_HV1H2
---
---
A/B
T
69
N
20
UniProt
VAR_POL_HV1H2_088
*
K
657
E
POL_HV1H2
---
---
A/B
K
70
E
21
UniProt
VAR_POL_HV1H2_089
*
K
657
R
POL_HV1H2
---
---
A/B
K
70
R
22
UniProt
VAR_POL_HV1H2_090
*
K
657
S
POL_HV1H2
---
---
A/B
K
70
S
23
UniProt
VAR_POL_HV1H2_091
*
L
661
I
POL_HV1H2
---
---
A/B
L
74
I
24
UniProt
VAR_POL_HV1H2_092
*
L
661
V
POL_HV1H2
---
---
A/B
L
74
V
25
UniProt
VAR_POL_HV1H2_093
*
V
662
I
POL_HV1H2
---
---
A/B
V
75
I
26
UniProt
VAR_POL_HV1H2_094
*
V
662
L
POL_HV1H2
---
---
A/B
V
75
L
27
UniProt
VAR_POL_HV1H2_095
*
V
662
M
POL_HV1H2
---
---
A/B
V
75
M
28
UniProt
VAR_POL_HV1H2_096
*
V
662
T
POL_HV1H2
---
---
A/B
V
75
T
29
UniProt
VAR_POL_HV1H2_097
*
F
664
L
POL_HV1H2
---
---
A/B
F
77
L
30
UniProt
VAR_POL_HV1H2_098
*
W
675
G
POL_HV1H2
---
---
A/B
W
88
G
31
UniProt
VAR_POL_HV1H2_099
*
W
675
S
POL_HV1H2
---
---
A/B
W
88
S
32
UniProt
VAR_POL_HV1H2_100
*
E
676
G
POL_HV1H2
---
---
A
E
89
G
33
UniProt
VAR_POL_HV1H2_101
*
E
676
K
POL_HV1H2
---
---
A
E
89
K
34
UniProt
VAR_POL_HV1H2_102
*
L
679
I
POL_HV1H2
---
---
A
L
92
I
35
UniProt
VAR_POL_HV1H2_103
*
L
687
I
POL_HV1H2
---
---
A/B
L
100
I
36
UniProt
VAR_POL_HV1H2_104
*
K
688
E
POL_HV1H2
---
---
A/B
K
101
E
37
UniProt
VAR_POL_HV1H2_105
*
K
688
P
POL_HV1H2
---
---
A/B
K
101
P
38
UniProt
VAR_POL_HV1H2_106
*
K
688
Q
POL_HV1H2
---
---
A/B
K
101
Q
39
UniProt
VAR_POL_HV1H2_107
*
K
690
E
POL_HV1H2
---
---
A/B
K
103
E
40
UniProt
VAR_POL_HV1H2_108
*
K
690
N
POL_HV1H2
---
---
A/B
K
103
N
41
UniProt
VAR_POL_HV1H2_109
*
K
690
R
POL_HV1H2
---
---
A/B
K
103
R
42
UniProt
VAR_POL_HV1H2_110
*
V
693
A
POL_HV1H2
---
---
A/B
V
106
A
43
UniProt
VAR_POL_HV1H2_111
*
V
693
I
POL_HV1H2
---
---
A/B
V
106
I
44
UniProt
VAR_POL_HV1H2_112
*
V
693
M
POL_HV1H2
---
---
A/B
V
106
M
45
UniProt
VAR_POL_HV1H2_113
*
V
695
I
POL_HV1H2
---
---
A/B
V
108
I
46
UniProt
VAR_POL_HV1H2_114
*
Y
702
F
POL_HV1H2
---
---
A/B
Y
115
F
47
UniProt
VAR_POL_HV1H2_115
*
F
703
Y
POL_HV1H2
---
---
A/B
F
116
Y
48
UniProt
VAR_POL_HV1H2_116
*
V
705
I
POL_HV1H2
---
---
A/B
V
118
I
49
UniProt
VAR_POL_HV1H2_117
*
P
706
S
POL_HV1H2
---
---
A/B
P
119
S
50
UniProt
VAR_POL_HV1H2_118
*
I
722
L
POL_HV1H2
---
---
A/B
I
135
L
51
UniProt
VAR_POL_HV1H2_119
*
I
722
M
POL_HV1H2
---
---
A/B
I
135
M
52
UniProt
VAR_POL_HV1H2_120
*
I
722
T
POL_HV1H2
---
---
A/B
I
135
T
53
UniProt
VAR_POL_HV1H2_121
*
E
725
K
POL_HV1H2
---
---
A/B
E
138
K
54
UniProt
VAR_POL_HV1H2_122
*
Q
732
M
POL_HV1H2
---
---
A/B
Q
145
M
55
UniProt
VAR_POL_HV1H2_123
*
Q
738
M
POL_HV1H2
---
---
A/B
Q
151
M
56
UniProt
VAR_POL_HV1H2_124
*
S
743
A
POL_HV1H2
---
---
A/B
S
156
A
57
UniProt
VAR_POL_HV1H2_125
*
P
744
S
POL_HV1H2
---
---
A/B
P
157
S
58
UniProt
VAR_POL_HV1H2_126
*
Q
748
L
POL_HV1H2
---
---
A/B
Q
161
L
59
UniProt
VAR_POL_HV1H2_127
*
V
766
D
POL_HV1H2
---
---
A/B
V
179
D
60
UniProt
VAR_POL_HV1H2_128
*
Y
768
C
POL_HV1H2
---
---
A/B
Y
181
C
61
UniProt
VAR_POL_HV1H2_129
*
M
771
I
POL_HV1H2
---
---
A/B
M
184
I
62
UniProt
VAR_POL_HV1H2_130
*
M
771
T
POL_HV1H2
---
---
A/B
M
184
T
63
UniProt
VAR_POL_HV1H2_131
*
M
771
V
POL_HV1H2
---
---
A/B
M
184
V
64
UniProt
VAR_POL_HV1H2_132
*
Y
775
C
POL_HV1H2
---
---
A/B
Y
188
C
65
UniProt
VAR_POL_HV1H2_133
*
Y
775
H
POL_HV1H2
---
---
A/B
Y
188
H
66
UniProt
VAR_POL_HV1H2_134
*
Y
775
L
POL_HV1H2
---
---
A/B
Y
188
L
67
UniProt
VAR_POL_HV1H2_135
*
V
776
I
POL_HV1H2
---
---
A/B
V
189
I
68
UniProt
VAR_POL_HV1H2_136
*
G
777
A
POL_HV1H2
---
---
A/B
G
190
A
69
UniProt
VAR_POL_HV1H2_137
*
G
777
C
POL_HV1H2
---
---
A/B
G
190
C
70
UniProt
VAR_POL_HV1H2_138
*
G
777
E
POL_HV1H2
---
---
A/B
G
190
E
71
UniProt
VAR_POL_HV1H2_139
*
G
777
Q
POL_HV1H2
---
---
A/B
G
190
Q
72
UniProt
VAR_POL_HV1H2_140
*
G
777
S
POL_HV1H2
---
---
A/B
G
190
S
73
UniProt
VAR_POL_HV1H2_141
*
G
777
T
POL_HV1H2
---
---
A/B
G
190
T
74
UniProt
VAR_POL_HV1H2_142
*
G
777
V
POL_HV1H2
---
---
A/B
G
190
V
75
UniProt
VAR_POL_HV1H2_143
*
H
795
Y
POL_HV1H2
---
---
A/B
H
208
Y
76
UniProt
VAR_POL_HV1H2_144
*
L
797
W
POL_HV1H2
---
---
A/B
L
210
W
77
UniProt
VAR_POL_HV1H2_145
*
R
798
K
POL_HV1H2
---
---
A/B
R
211
K
78
UniProt
VAR_POL_HV1H2_146
*
L
801
F
POL_HV1H2
---
---
A
L
214
F
79
UniProt
VAR_POL_HV1H2_147
*
T
802
F
POL_HV1H2
---
---
A
T
215
F
80
UniProt
VAR_POL_HV1H2_148
*
T
802
Y
POL_HV1H2
---
---
A
T
215
Y
81
UniProt
VAR_POL_HV1H2_149
*
K
806
E
POL_HV1H2
---
---
A
K
219
E
82
UniProt
VAR_POL_HV1H2_150
*
K
806
Q
POL_HV1H2
---
---
A
K
219
Q
83
UniProt
VAR_POL_HV1H2_151
*
K
806
R
POL_HV1H2
---
---
A
K
219
R
84
UniProt
VAR_POL_HV1H2_152
*
P
812
H
POL_HV1H2
---
---
A
P
225
H
85
UniProt
VAR_POL_HV1H2_153
*
P
823
L
POL_HV1H2
---
---
A/B
P
236
L
86
UniProt
VAR_POL_HV1H2_154
*
K
825
T
POL_HV1H2
---
---
A/B
K
238
T
87
UniProt
VAR_POL_HV1H2_155
*
L
870
I
POL_HV1H2
---
---
A/B
L
283
I
88
UniProt
VAR_POL_HV1H2_156
*
Y
905
F
POL_HV1H2
---
---
A/B
Y
318
F
89
UniProt
VAR_POL_HV1H2_157
*
G
920
D
POL_HV1H2
---
---
A/B
G
333
D
90
UniProt
VAR_POL_HV1H2_158
*
G
920
E
POL_HV1H2
---
---
A/B
G
333
E
91
UniProt
VAR_POL_HV1H2_159
*
T
973
I
POL_HV1H2
---
---
A/B
T
386
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-539,B:434-435)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1H2
631-821
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1H2
1021-1144
2
A:434-539
B:434-435
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1tkxa1 (A:430-537)
2a: SCOP_d1tkxa2 (A:7-427)
2b: SCOP_d1tkxb1 (B:7-427)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d1tkxa1
A:430-537
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d1tkxa2
A:7-427
2b
d1tkxb1
B:7-427
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1tkxB02 (B:99-115,B:157-233)
1b: CATH_1tkxB03 (B:234-319)
1c: CATH_1tkxA03 (A:226-319)
1d: CATH_1tkxA04 (A:320-426)
1e: CATH_1tkxB04 (B:320-426)
1f: CATH_1tkxA02 (A:91-115,A:157-225)
2a: CATH_1tkxA05 (A:427-538)
3a: CATH_1tkxB01 (B:6-95,B:116-156)
3b: CATH_1tkxA01 (A:3-90,A:116-156)
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)
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(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: hxb2 isolate.
(6)
1a
1tkxB02
B:99-115,B:157-233
1b
1tkxB03
B:234-319
1c
1tkxA03
A:226-319
1d
1tkxA04
A:320-426
1e
1tkxB04
B:320-426
1f
1tkxA02
A:91-115,A:157-225
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: hxb2 isolate.
(6)
2a
1tkxA05
A:427-538
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: hxb2 isolate.
(6)
3a
1tkxB01
B:6-95,B:116-156
3b
1tkxA01
A:3-90,A:116-156
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Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_RNase_H_1tkxA01 (A:435-539)
2a: PFAM_RVT_1_1tkxB01 (B:63-234)
2b: PFAM_RVT_1_1tkxB02 (B:63-234)
3a: PFAM_RVT_connect_1tkxB03 (B:317-419)
3b: PFAM_RVT_connect_1tkxB04 (B:317-419)
4a: PFAM_RVT_thumb_1tkxB05 (B:238-307)
4b: PFAM_RVT_thumb_1tkxB06 (B:238-307)
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Clan
:
RNase_H
(288)
Family
:
RNase_H
(128)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(58)
1a
RNase_H-1tkxA01
A:435-539
Clan
:
RdRP
(210)
Family
:
RVT_1
(95)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
2a
RVT_1-1tkxB01
B:63-234
2b
RVT_1-1tkxB02
B:63-234
Clan
:
no clan defined [family: RVT_connect]
(84)
Family
:
RVT_connect
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
3a
RVT_connect-1tkxB03
B:317-419
3b
RVT_connect-1tkxB04
B:317-419
Clan
:
no clan defined [family: RVT_thumb]
(84)
Family
:
RVT_thumb
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
4a
RVT_thumb-1tkxB05
B:238-307
4b
RVT_thumb-1tkxB06
B:238-307
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