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1THQ
Asym. Unit
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Asym.Unit (34 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OUTER MEMBRANE ENZYME PAGP
Authors
:
V. E. Ahn, E. I. Lo, C. K. Engel, L. Chen, P. M. Hwang, L. E. Kay, R. E. Bishop G. G. Prive
Date
:
01 Jun 04 (Deposition) - 10 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Palmitoyltransferase, Beta-Barrel, Outer Membrane Enzyme, Pagp, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. E. Ahn, E. I. Lo, C. K. Engel, L. Chen, P. M. Hwang, L. E. Kay, R. E. Bishop, G. G. Prive
A Hydrocarbon Ruler Measures Palmitate In The Enzymatic Acylation Of Endotoxin.
Embo J. V. 23 2931 2004
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
2b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
2c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
2d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
2e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
LDA
5
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
3
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:114
BINDING SITE FOR RESIDUE ACT A 400
02
AC2
SOFTWARE
ASN A:12 , TYR A:87 , TRP A:89
BINDING SITE FOR RESIDUE ACT A 401
03
AC3
SOFTWARE
LEU A:25 , ALA A:113 , TYR A:119
BINDING SITE FOR RESIDUE ACT A 402
04
AC4
SOFTWARE
GLU A:21
BINDING SITE FOR RESIDUE ACT A 403
05
AC5
SOFTWARE
PRO A:135 , GLN A:160
BINDING SITE FOR RESIDUE ACT A 404
06
AC6
SOFTWARE
TYR A:70 , MET A:72 , PHE A:74 , LYS A:75 , GLU A:82 , TRP A:156
BINDING SITE FOR RESIDUE LDA A 200
07
AC7
SOFTWARE
TYR A:23 , PHE A:55
BINDING SITE FOR RESIDUE LDA A 201
08
AC8
SOFTWARE
SER A:91 , TRP A:93
BINDING SITE FOR RESIDUE LDA A 202
09
AC9
SOFTWARE
PHE A:36
BINDING SITE FOR RESIDUE LDA A 203
10
BC1
SOFTWARE
ILE A:30
BINDING SITE FOR RESIDUE LDA A 204
11
BC2
SOFTWARE
ASP A:98 , THR A:146 , HOH A:509
BINDING SITE FOR RESIDUE MPD A 300
12
BC3
SOFTWARE
ASN A:118
BINDING SITE FOR RESIDUE MPD A 301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1thqa_ (A:)
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)
(
)
Folds
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)
(
)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
OMPA-like
(26)
Family
:
Outer membrane enzyme PagP
(4)
Protein domain
:
Outer membrane enzyme PagP
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1thqa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1thqA00 (A:7-163)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Porin
(92)
Homologous Superfamily
:
[code=2.40.160.20, no name defined]
(20)
Escherichia coli. Organism_taxid: 562.
(11)
1a
1thqA00
A:7-163
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Chain A
Asymmetric Unit 1
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Asym.Unit (34 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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