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1TH1
Asym. Unit
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Asym.Unit (182 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
BETA-CATENIN IN COMPLEX WITH A PHOSPHORYLATED APC 20AA REPEAT FRAGMENT
Authors
:
Y. Xing, W. K. Clements, I. Le Trong, T. R. Hinds, R. Stenkamp, D. Kimelman, W. Xu
Date
:
31 May 04 (Deposition) - 07 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein-Protein Complex, Cell Adhesion/Antitumor Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Xing, W. K. Clements, I. Le Trong, T. R. Hinds, R. Stenkamp, D. Kimelman, W. Xu
Crystal Structure Of A Beta-Catenin/Apc Complex Reveals A Critical Role For Apc Phosphorylation In Apc Function.
Mol. Cell V. 15 523 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
1c: PHOSPHOSERINE (SEPc)
1d: PHOSPHOSERINE (SEPd)
1e: PHOSPHOSERINE (SEPe)
1f: PHOSPHOSERINE (SEPf)
1g: PHOSPHOSERINE (SEPg)
1h: PHOSPHOSERINE (SEPh)
2a: PHOSPHOTHREONINE (TPOa)
2b: PHOSPHOTHREONINE (TPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
8
Mod. Amino Acid
PHOSPHOSERINE
2
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072282 (L388P, chain A/B, )
2: VAR_017654 (V1472I, chain C/D, )
3: VAR_017655 (S1495G, chain C/D, )
4: VAR_020141 (T1496S, chain C/D, )
5: VAR_012976 (A1508V, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072282
L
388
P
CTNB1_HUMAN
Disease (MRD19)
---
A/B
L
388
P
2
UniProt
VAR_017654
V
1472
I
APC_HUMAN
Disease (MDB)
---
C/D
V
1472
I
3
UniProt
VAR_017655
S
1495
G
APC_HUMAN
Disease (MDB)
---
C/D
S
1495
G
4
UniProt
VAR_020141
T
1496
S
APC_HUMAN
Polymorphism
2229996
C/D
T
1496
S
5
UniProt
VAR_012976
A
1508
V
APC_HUMAN
Unclassified
---
C/D
A
1508
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:193-236,B:193-236|A:151-191,B:15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
CTNB1_HUMAN
193-236
151-191
235-277
277-319
319-362
400-442
442-484
489-532
594-636
18
A:193-236
B:193-236
A:151-191
B:151-191
A:235-277
B:235-277
A:277-319
B:277-319
A:319-362
B:319-362
A:400-442
B:400-442
A:442-484
B:442-484
A:489-532
B:489-532
A:594-636
B:594-636
[
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]
Exons
(11, 22)
Info
All Exons
Exon 1.20g (C:1468-1529 (gaps) | D:1469-1529 (...)
Exon 2.10d (A:145-165 | B:146-165)
Exon 2.11b (A:166-245 | B:166-245)
Exon 2.12 (A:245-312 | B:245-312)
Exon 2.13 (A:313-361 | B:313-361)
Exon 2.14 (A:361-395 | B:361-395)
Exon 2.15 (A:396-508 | B:396-508)
Exon 2.16a (A:509-561 (gaps) | B:509-561 (gaps...)
Exon 2.17b (A:562-601 | B:562-601)
Exon 2.18a (A:602-652 | B:602-652)
Exon 2.18d (A:652-664 | B:652-664)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.19/1.20g
02: Boundary 1.20g/-
03: Boundary 2.9e/2.10d
04: Boundary 2.10d/2.11b
05: Boundary 2.11b/2.12
06: Boundary 2.12/2.13
07: Boundary 2.13/2.14
08: Boundary 2.14/2.15
09: Boundary 2.15/2.16a
10: Boundary 2.16a/2.17b
11: Boundary 2.17b/2.18a
12: Boundary 2.18a/2.18d
13: Boundary 2.18d/2.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000257430
2c
ENSE00001913252
chr5:
112073585-112073622
38
APC_HUMAN
-
0
0
-
-
1.4
ENST00000257430
4
ENSE00002144134
chr5:
112090570-112090722
153
APC_HUMAN
1-45
45
0
-
-
1.5b
ENST00000257430
5b
ENSE00000917796
chr5:
112102023-112102107
85
APC_HUMAN
46-74
29
0
-
-
1.6b
ENST00000257430
6b
ENSE00000972225
chr5:
112102886-112103087
202
APC_HUMAN
74-141
68
0
-
-
1.7
ENST00000257430
7
ENSE00000917798
chr5:
112111326-112111434
109
APC_HUMAN
141-177
37
0
-
-
1.8a
ENST00000257430
8a
ENSE00000972226
chr5:
112116487-112116600
114
APC_HUMAN
178-215
38
0
-
-
1.9
ENST00000257430
9
ENSE00000972227
chr5:
112128143-112128226
84
APC_HUMAN
216-243
28
0
-
-
1.10
ENST00000257430
10
ENSE00000972228
chr5:
112136976-112137080
105
APC_HUMAN
244-278
35
0
-
-
1.12
ENST00000257430
12
ENSE00000917801
chr5:
112151192-112151290
99
APC_HUMAN
279-311
33
0
-
-
1.13b
ENST00000257430
13b
ENSE00000917803
chr5:
112154663-112155041
379
APC_HUMAN
312-438
127
0
-
-
1.14a
ENST00000257430
14a
ENSE00000917804
chr5:
112157593-112157688
96
APC_HUMAN
438-470
33
0
-
-
1.16a
ENST00000257430
16a
ENSE00000917807
chr5:
112162805-112162944
140
APC_HUMAN
470-516
47
0
-
-
1.17
ENST00000257430
17
ENSE00000760099
chr5:
112163626-112163703
78
APC_HUMAN
517-542
26
0
-
-
1.18b
ENST00000257430
18b
ENSE00000917809
chr5:
112164553-112164669
117
APC_HUMAN
543-581
39
0
-
-
1.19
ENST00000257430
19
ENSE00000972229
chr5:
112170648-112170862
215
APC_HUMAN
582-653
72
0
-
-
1.20g
ENST00000257430
20g
ENSE00000972230
chr5:
112173250-112181936
8687
APC_HUMAN
653-2843
2191
2
C:1468-1529 (gaps)
D:1469-1529 (gaps)
62
61
2.4e
ENST00000396185
4e
ENSE00001933873
chr3:
41240996-41241161
166
CTNB1_HUMAN
-
0
0
-
-
2.7
ENST00000396185
7
ENSE00002142861
chr3:
41265512-41265572
61
CTNB1_HUMAN
1-5
5
0
-
-
2.9e
ENST00000396185
9e
ENSE00001697426
chr3:
41266017-41266244
228
CTNB1_HUMAN
5-81
77
0
-
-
2.10d
ENST00000396185
10d
ENSE00001748344
chr3:
41266445-41266698
254
CTNB1_HUMAN
81-165
85
2
A:145-165
B:146-165
21
20
2.11b
ENST00000396185
11b
ENSE00001692569
chr3:
41266825-41267063
239
CTNB1_HUMAN
166-245
80
2
A:166-245
B:166-245
80
80
2.12
ENST00000396185
12
ENSE00001643204
chr3:
41267151-41267352
202
CTNB1_HUMAN
245-312
68
2
A:245-312
B:245-312
68
68
2.13
ENST00000396185
13
ENSE00001767208
chr3:
41268699-41268843
145
CTNB1_HUMAN
313-361
49
2
A:313-361
B:313-361
49
49
2.14
ENST00000396185
14
ENSE00001649367
chr3:
41274832-41274935
104
CTNB1_HUMAN
361-395
35
2
A:361-395
B:361-395
35
35
2.15
ENST00000396185
15
ENSE00001718373
chr3:
41275020-41275358
339
CTNB1_HUMAN
396-508
113
2
A:396-508
B:396-508
113
113
2.16a
ENST00000396185
16a
ENSE00001592339
chr3:
41275630-41275788
159
CTNB1_HUMAN
509-561
53
2
A:509-561 (gaps)
B:509-561 (gaps)
53
53
2.17b
ENST00000396185
17b
ENSE00001707050
chr3:
41277215-41277334
120
CTNB1_HUMAN
562-601
40
2
A:562-601
B:562-601
40
40
2.18a
ENST00000396185
18a
ENSE00002175036
chr3:
41277840-41277990
151
CTNB1_HUMAN
602-652
51
2
A:602-652
B:602-652
51
51
2.18d
ENST00000396185
18d
ENSE00001782706
chr3:
41278079-41278200
122
CTNB1_HUMAN
652-692
41
2
A:652-664
B:652-664
13
13
2.19
ENST00000396185
19
ENSE00001805633
chr3:
41279507-41279567
61
CTNB1_HUMAN
693-713
21
0
-
-
2.20c
ENST00000396185
20c
ENSE00001524181
chr3:
41280625-41280845
221
CTNB1_HUMAN
713-781
69
0
-
-
2.20g
ENST00000396185
20g
ENSE00001524178
chr3:
41281151-41281934
784
CTNB1_HUMAN
-
0
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1th1a_ (A:)
1b: SCOP_d1th1b_ (B:)
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(
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(
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
beta-Catenin
(21)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1th1a_
A:
1b
d1th1b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1th1B00 (B:146-664)
1b: CATH_1th1A00 (A:145-664)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Human (Homo sapiens)
(30)
1a
1th1B00
B:146-664
1b
1th1A00
A:145-664
[
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Pfam Domains
(2, 9)
Info
all PFAM domains
1a: PFAM_Arm_1th1B01 (B:583-623)
1b: PFAM_Arm_1th1B02 (B:583-623)
1c: PFAM_Arm_1th1B03 (B:583-623)
1d: PFAM_Arm_1th1B04 (B:583-623)
1e: PFAM_Arm_1th1B05 (B:583-623)
1f: PFAM_Arm_1th1B06 (B:583-623)
1g: PFAM_Arm_1th1B07 (B:583-623)
1h: PFAM_Arm_1th1B08 (B:583-623)
2a: PFAM_APC_crr_1th1C01 (C:1485-1510)
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(
)
Clan
:
TPR
(230)
Family
:
Arm
(24)
Homo sapiens (Human)
(19)
1a
Arm-1th1B01
B:583-623
1b
Arm-1th1B02
B:583-623
1c
Arm-1th1B03
B:583-623
1d
Arm-1th1B04
B:583-623
1e
Arm-1th1B05
B:583-623
1f
Arm-1th1B06
B:583-623
1g
Arm-1th1B07
B:583-623
1h
Arm-1th1B08
B:583-623
Clan
:
no clan defined [family: APC_crr]
(3)
Family
:
APC_crr
(3)
Homo sapiens (Human)
(3)
2a
APC_crr-1th1C01
C:1485-1510
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