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1TGH
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
TATA BINDING PROTEIN (TBP)/DNA COMPLEX
Authors
:
Z. S. Juo, R. E. Dickerson
Date
:
13 Feb 96 (Deposition) - 01 Aug 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Transcription Factor, Dna Binding Protein, Dna, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. S. Juo, T. K. Chiu, P. M. Leiberman, I. Baikalov, A. J. Berk, R. E. Dickerson
How Proteins Recognize The Tata Box.
J. Mol. Biol. V. 261 239 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TFIID (A:188-237|A:279-328)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TFIID
PS00351
Transcription factor TFIID repeat signature.
TBP_HUMAN
192-241
283-332
2
A:188-237
A:279-328
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Exons
(6, 6)
Info
All Exons
Exon 1.4c (A:155-162)
Exon 1.5 (A:162-191)
Exon 1.6b (A:192-222)
Exon 1.7b (A:222-278)
Exon 1.8 (A:278-310)
Exon 1.9b (A:310-334)
View:
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All Exon Boundaries
1: Boundary 1.3b/1.4c
2: Boundary 1.4c/1.5
3: Boundary 1.5/1.6b
4: Boundary 1.6b/1.7b
5: Boundary 1.7b/1.8
6: Boundary 1.8/1.9b
7: Boundary 1.9b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000392092
1b
ENSE00001510680
chr6:
170863459-170863551
93
TBP_HUMAN
-
0
0
-
-
1.3b
ENST00000392092
3b
ENSE00001510679
chr6:
170865970-170866171
202
TBP_HUMAN
1-18
18
0
-
-
1.4c
ENST00000392092
4c
ENSE00000854357
chr6:
170870879-170871321
443
TBP_HUMAN
19-166
148
1
A:155-162
8
1.5
ENST00000392092
5
ENSE00000766152
chr6:
170873633-170873720
88
TBP_HUMAN
166-195
30
1
A:162-191
30
1.6b
ENST00000392092
6b
ENSE00000766154
chr6:
170876006-170876097
92
TBP_HUMAN
196-226
31
1
A:192-222
31
1.7b
ENST00000392092
7b
ENSE00001593404
chr6:
170878700-170878867
168
TBP_HUMAN
226-282
57
1
A:222-278
57
1.8
ENST00000392092
8
ENSE00001773146
chr6:
170880498-170880592
95
TBP_HUMAN
282-314
33
1
A:278-310
33
1.9b
ENST00000392092
9b
ENSE00001510678
chr6:
170881274-170881944
671
TBP_HUMAN
314-339
26
1
A:310-334
25
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tgha1 (A:155-252)
1b: SCOP_d1tgha2 (A:253-334)
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)
(
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
TATA-box binding protein-like
(70)
Family
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Protein domain
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1tgha1
A:155-252
1b
d1tgha2
A:253-334
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tghA01 (A:155-165,A:252-334)
1b: CATH_1tghA02 (A:166-251)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
TATA-Binding Protein
(37)
[unclassified]
(13)
1a
1tghA01
A:155-165,A:252-334
1b
1tghA02
A:166-251
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TBP_1tghA01 (A:246-332)
1b: PFAM_TBP_1tghA02 (A:246-332)
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Clans
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Organisms
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)
(
)
Clan
:
TBP-like
(48)
Family
:
TBP
(22)
Homo sapiens (Human)
(3)
1a
TBP-1tghA01
A:246-332
1b
TBP-1tghA02
A:246-332
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