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1TF1
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Asym.Unit (125 KB)
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Biol.Unit 4 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E. COLI GLYOXYLATE REGULATORY PROTEIN LIGAND BINDING DOMAIN
Authors
:
J. R. Walker, T. Skarina, M. Kudrytska, A. Joachimiak, C. Arrowsmith, A. Edwards, A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date
:
26 May 04 (Deposition) - 03 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Midwest Center For Structural Genomics, Glcr, Ligand Binding Domain, Transcriptional Regulator, Psi, Protein Structure Initiative, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, S. Altamentova, A. Ezersky, G. Lorca, T. Skarina, M. Kudritska, L. J. Ball, A. Bochkarev, A. Savchenko
Structural And Biochemical Study Of Effector Molecule Recognition By The E. Coli Glyoxylate And Allantoin Utilization Regulatory Protein Allr.
J. Mol. Biol. V. 358 810 2006
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(2, 6)
Info
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1: HTH_ICLR (A:8-10,D:8-10)
2: ICLR_ED (A:12-182,B:12-182,C:12-182,D:12-18...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_ICLR
PS51077
IclR-type HTH domain profile.
ALLR_ECOLI
21-83
2
A:8-10
D:8-10
2
ICLR_ED
PS51078
IclR effector binding domain profile.
ALLR_ECOLI
84-267
4
A:12-182
B:12-182
C:12-182
D:12-182
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1tf1a_ (A:)
1b: SCOP_d1tf1b_ (B:)
1c: SCOP_d1tf1c_ (C:)
1d: SCOP_d1tf1d_ (D:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
GAF domain-like
(54)
Family
:
IclR ligand-binding domain-like
(5)
Protein domain
:
Transcriptional regulator AllR, C-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1tf1a_
A:
1b
d1tf1b_
B:
1c
d1tf1c_
C:
1d
d1tf1d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1tf1B00 (B:6-183)
1b: CATH_1tf1C00 (C:5-183)
1c: CATH_1tf1D00 (D:1-183)
1d: CATH_1tf1A00 (A:1-184)
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.40, no name defined]
(27)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1tf1B00
B:6-183
1b
1tf1C00
C:5-183
1c
1tf1D00
D:1-183
1d
1tf1A00
A:1-184
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_IclR_1tf1D01 (D:54-179)
1b: PFAM_IclR_1tf1D02 (D:54-179)
1c: PFAM_IclR_1tf1D03 (D:54-179)
1d: PFAM_IclR_1tf1D04 (D:54-179)
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Clan
:
GAF
(44)
Family
:
IclR
(7)
Escherichia coli (strain K12)
(5)
1a
IclR-1tf1D01
D:54-179
1b
IclR-1tf1D02
D:54-179
1c
IclR-1tf1D03
D:54-179
1d
IclR-1tf1D04
D:54-179
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Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
Biol.Unit 3 (32 KB)
Header - Biol.Unit 3
Biol.Unit 4 (33 KB)
Header - Biol.Unit 4
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