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1TAD
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (62 KB)
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(1)
Title
:
GTPASE MECHANISM OF GPROTEINS FROM THE 1.7-ANGSTROM CRYSTAL STRUCTURE OF TRANSDUCIN ALPHA-GDP-ALF4-
Authors
:
J. Sondek, D. G. Lambright, J. P. Noel, H. E. Hamm, P. B. Sigler
Date
:
05 Jan 95 (Deposition) - 08 May 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Gtp-Binding Protein, G-Protein, Gtpase, Transducin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Sondek, D. G. Lambright, J. P. Noel, H. E. Hamm, P. B. Sigler
Gtpase Mechanism Of Gproteins From The 1. 7-A Crystal Structure Of Transducin Alpha-Gdp-Aif-4.
Nature V. 372 276 1994
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
1c: TETRAFLUOROALUMINATE ION (ALFc)
3a: CACODYLATE ION (CACa)
3b: CACODYLATE ION (CACb)
3c: CACODYLATE ION (CACc)
3d: CACODYLATE ION (CACd)
3e: CACODYLATE ION (CACe)
3f: CACODYLATE ION (CACf)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
4a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
3
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
CA
3
Ligand/Ion
CALCIUM ION
3
CAC
6
Ligand/Ion
CACODYLATE ION
4
GDP
3
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:43 , THR A:177 , GDP A:351 , ALF A:355 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE CA A 352
02
AC2
SOFTWARE
CYS A:62 , VAL A:164 , PRO A:165 , ILE B:180
BINDING SITE FOR RESIDUE CAC A 353
03
AC3
SOFTWARE
ILE A:180 , VAL A:197 , TRP A:207 , CYS A:210
BINDING SITE FOR RESIDUE CAC A 354
04
AC4
SOFTWARE
ALA A:37 , GLY A:38 , GLU A:39 , LYS A:42 , ARG A:174 , LYS A:176 , THR A:177 , VAL A:197 , GLY A:198 , GLY A:199 , GLN A:200 , GDP A:351 , CA A:352 , HOH A:400 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE ALF A 355
05
AC5
SOFTWARE
SER B:43 , THR B:177 , GDP B:351 , ALF B:355 , HOH B:404 , HOH B:405
BINDING SITE FOR RESIDUE CA B 352
06
AC6
SOFTWARE
CYS B:62 , VAL B:164 , PRO B:165
BINDING SITE FOR RESIDUE CAC B 353
07
AC7
SOFTWARE
VAL B:197 , TRP B:207 , CYS B:210
BINDING SITE FOR RESIDUE CAC B 354
08
AC8
SOFTWARE
ALA B:37 , GLY B:38 , GLU B:39 , LYS B:42 , ARG B:174 , LYS B:176 , THR B:177 , VAL B:197 , GLY B:198 , GLY B:199 , GLN B:200 , GDP B:351 , CA B:352 , HOH B:403 , HOH B:404 , HOH B:405
BINDING SITE FOR RESIDUE ALF B 355
09
AC9
SOFTWARE
SER C:43 , THR C:177 , GDP C:351 , ALF C:355 , HOH C:407 , HOH C:408
BINDING SITE FOR RESIDUE CA C 352
10
BC1
SOFTWARE
CYS C:62 , VAL C:164 , PRO C:165 , HOH C:904
BINDING SITE FOR RESIDUE CAC C 353
11
BC2
SOFTWARE
ILE C:180 , VAL C:197 , TRP C:207 , CYS C:210
BINDING SITE FOR RESIDUE CAC C 354
12
BC3
SOFTWARE
GLY C:38 , GLU C:39 , LYS C:42 , ARG C:174 , LYS C:176 , THR C:177 , VAL C:197 , GLY C:198 , GLY C:199 , GLN C:200 , GDP C:351 , CA C:352 , HOH C:406 , HOH C:407 , HOH C:408
BINDING SITE FOR RESIDUE ALF C 355
13
BC4
SOFTWARE
GLU A:39 , SER A:40 , GLY A:41 , LYS A:42 , SER A:43 , THR A:44 , ASP A:146 , SER A:147 , LEU A:171 , ARG A:172 , SER A:173 , ARG A:174 , ASN A:265 , LYS A:266 , ASP A:268 , VAL A:269 , CYS A:321 , ALA A:322 , THR A:323 , CA A:352 , ALF A:355 , HOH A:401 , HOH A:412 , HOH A:414 , HOH A:464 , HOH A:1000
BINDING SITE FOR RESIDUE GDP A 351
14
BC5
SOFTWARE
GLU B:39 , SER B:40 , GLY B:41 , LYS B:42 , SER B:43 , THR B:44 , ASP B:146 , SER B:147 , LEU B:171 , ARG B:172 , SER B:173 , ARG B:174 , ASN B:265 , LYS B:266 , ASP B:268 , VAL B:269 , CYS B:321 , ALA B:322 , THR B:323 , CA B:352 , ALF B:355 , HOH B:405 , HOH B:516 , HOH B:517 , HOH B:519 , HOH B:1165 , HOH B:1260
BINDING SITE FOR RESIDUE GDP B 351
15
BC6
SOFTWARE
GLU C:39 , SER C:40 , GLY C:41 , LYS C:42 , SER C:43 , THR C:44 , ASP C:146 , SER C:147 , LEU C:171 , ARG C:172 , SER C:173 , ARG C:174 , ASN C:265 , LYS C:266 , ASP C:268 , VAL C:269 , CYS C:321 , ALA C:322 , THR C:323 , CA C:352 , ALF C:355 , HOH C:408 , HOH C:592 , HOH C:596 , HOH C:892 , HOH C:942
BINDING SITE FOR RESIDUE GDP C 351
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(8, 24)
Info
All Exons
Exon 1.1 (A:27-36 | B:27-36 | C:27-36)
Exon 1.2 (A:36-50 | B:36-50 | C:36-50)
Exon 1.3 (A:50-97 | B:50-97 | C:50-97)
Exon 1.4 (A:98-150 | B:98-150 | C:98-150)
Exon 1.5 (A:150-193 | B:150-193 | C:150-193)
Exon 1.6 (A:193-236 | B:193-236 | C:193-236)
Exon 1.7 (A:237-288 | B:237-288 | C:237-288)
Exon 1.8 (A:288-342 | B:288-342 | C:288-344)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/1.9
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000023990
1
ENSBTAE00000247883
chr22:
51063839-51063597
243
GNAT1_BOVIN
1-36
36
3
A:27-36
B:27-36
C:27-36
10
10
10
1.2
ENSBTAT00000023990
2
ENSBTAE00000388493
chr22:
51062405-51062363
43
GNAT1_BOVIN
36-50
15
3
A:36-50
B:36-50
C:36-50
15
15
15
1.3
ENSBTAT00000023990
3
ENSBTAE00000247881
chr22:
51062224-51062083
142
GNAT1_BOVIN
50-97
48
3
A:50-97
B:50-97
C:50-97
48
48
48
1.4
ENSBTAT00000023990
4
ENSBTAE00000247880
chr22:
51061992-51061835
158
GNAT1_BOVIN
98-150
53
3
A:98-150
B:98-150
C:98-150
53
53
53
1.5
ENSBTAT00000023990
5
ENSBTAE00000195357
chr22:
51061741-51061613
129
GNAT1_BOVIN
150-193
44
3
A:150-193
B:150-193
C:150-193
44
44
44
1.6
ENSBTAT00000023990
6
ENSBTAE00000419260
chr22:
51061351-51061222
130
GNAT1_BOVIN
193-236
44
3
A:193-236
B:193-236
C:193-236
44
44
44
1.7
ENSBTAT00000023990
7
ENSBTAE00000195359
chr22:
51060899-51060746
154
GNAT1_BOVIN
237-288
52
3
A:237-288
B:237-288
C:237-288
52
52
52
1.8
ENSBTAT00000023990
8
ENSBTAE00000195360
chr22:
51060623-51060432
192
GNAT1_BOVIN
288-350
63
3
A:288-342
B:288-342
C:288-344
55
55
57
1.9
ENSBTAT00000023990
9
ENSBTAE00000195361
chr22:
51060077-51058825
1253
GNAT1_BOVIN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1tada1 (A:57-177)
1b: SCOP_d1tadb1 (B:57-177)
1c: SCOP_d1tadc1 (C:57-177)
2a: SCOP_d1tada2 (A:27-56,A:178-342)
2b: SCOP_d1tadb2 (B:27-56,B:178-342)
2c: SCOP_d1tadc2 (C:27-56,C:178-344)
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)
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Cow (Bos taurus) [TaxId: 9913]
(18)
1a
d1tada1
A:57-177
1b
d1tadb1
B:57-177
1c
d1tadc1
C:57-177
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Cow (Bos taurus) [TaxId: 9913]
(18)
2a
d1tada2
A:27-56,A:178-342
2b
d1tadb2
B:27-56,B:178-342
2c
d1tadc2
C:27-56,C:178-344
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1tadC01 (C:27-57,C:177-344)
1b: CATH_1tadA01 (A:27-57,A:177-342)
1c: CATH_1tadB01 (B:27-57,B:177-342)
2a: CATH_1tadA02 (A:58-176)
2b: CATH_1tadB02 (B:58-176)
2c: CATH_1tadC02 (C:58-176)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle (Bos taurus)
(17)
1a
1tadC01
C:27-57,C:177-344
1b
1tadA01
A:27-57,A:177-342
1c
1tadB01
B:27-57,B:177-342
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Cattle (Bos taurus)
(5)
2a
1tadA02
A:58-176
2b
1tadB02
B:58-176
2c
1tadC02
C:58-176
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_G_alpha_1tadC01 (C:27-344)
1b: PFAM_G_alpha_1tadC02 (C:27-344)
1c: PFAM_G_alpha_1tadC03 (C:27-344)
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Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Bos taurus (Bovine)
(8)
1a
G-alpha-1tadC01
C:27-344
1b
G-alpha-1tadC02
C:27-344
1c
G-alpha-1tadC03
C:27-344
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