PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1T9G
Asym. Unit
Info
Asym.Unit (310 KB)
Biol.Unit 1 (301 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE HUMAN MCAD:ETF COMPLEX
Authors
:
H. S. Toogood, A. Van Thiel, J. Basran, M. J. Sutcliffe, N. S. Scrutton, D. Leys
Date
:
17 May 04 (Deposition) - 08 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,R,S
Biol. Unit 1: A,B,C,D,R,S (1x)
Keywords
:
Electron Transfer, Protein:Protein Complex, Fatty Acid Oxidation, Human Electron Transferring Flavoprotein, Human Medium Chain Acyl Coa Dehydrogenase, Oxidoreductase, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Toogood, A. Van Thiel, J. Basran, M. J. Sutcliffe, N. S. Scrutton, D. Leys
Extensive Domain Motion And Electron Transfer In The Human Electron Transferring Flavoprotein-Medium Chain Acyl-Coa Dehydrogenase Complex
J. Biol. Chem. V. 279 32904 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 5)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA S:9 , VAL S:10 , LYS S:11 , CYS S:42 , CYS S:66 , LEU S:122 , GLY S:123 , GLN S:125 , ALA S:126 , ASP S:129 , CYS S:131 , ASN S:132 , GLN S:133 , THR S:134
BINDING SITE FOR RESIDUE AMP S 600
2
AC2
SOFTWARE
TYR A:133 , CYS A:134 , VAL A:135 , THR A:136 , GLY A:141 , SER A:142 , TRP A:166 , ILE A:167 , THR A:168 , ILE A:371 , ILE A:374 , TYR A:375 , GLU A:376 , THR A:378 , GLN A:380 , ARG B:281 , THR B:283 , PHE B:284 , HIS B:291 , GLN B:349 , ILE B:350 , GLY B:353 , GLN D:292
BINDING SITE FOR RESIDUE FAD A 399
3
AC3
SOFTWARE
ARG A:281 , THR A:283 , PHE A:284 , LEU A:288 , HIS A:291 , GLN A:349 , ILE A:350 , GLY A:353 , TYR B:133 , VAL B:135 , THR B:136 , GLY B:141 , SER B:142 , TRP B:166 , ILE B:167 , THR B:168 , ASN B:214 , THR B:222 , ILE B:374 , TYR B:375 , THR B:378 , GLN B:380 , GLN C:292
BINDING SITE FOR RESIDUE FAD B 399
4
AC4
SOFTWARE
GLN B:292 , TYR C:133 , VAL C:135 , THR C:136 , GLY C:141 , SER C:142 , TRP C:166 , ILE C:167 , THR C:168 , ILE C:371 , ILE C:374 , TYR C:375 , THR C:378 , GLN C:380 , ARG D:281 , THR D:283 , PHE D:284 , LEU D:288 , HIS D:291 , GLN D:349 , ILE D:350 , GLY D:352 , GLY D:353
BINDING SITE FOR RESIDUE FAD C 399
5
AC5
SOFTWARE
GLN A:292 , ARG C:281 , THR C:283 , PHE C:284 , LEU C:288 , HIS C:291 , GLN C:349 , ILE C:350 , GLY C:353 , TYR D:133 , VAL D:135 , THR D:136 , GLY D:141 , SER D:142 , TRP D:166 , THR D:168 , ASN D:214 , ILE D:371 , ILE D:374 , TYR D:375 , GLU D:376 , THR D:378 , GLN D:380
BINDING SITE FOR RESIDUE FAD D 399
[
close Site info
]
SAPs(SNPs)/Variants
(26, 86)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_000317 (R28C, chain A/B/C/D, )
02: VAR_013698 (Y42H, chain A/B/C/D, )
03: VAR_015954 (I53T, chain A/B/C/D, )
04: VAR_015955 (C91Y, chain A/B/C/D, )
05: VAR_015956 (T96I, chain A/B/C/D, )
06: VAR_035716 (P107R, chain A/B/C/D, )
07: VAR_002366 (G116R, chain R, )
08: VAR_000319 (M124I, chain A/B/C/D, )
09: VAR_025804 (D128N, chain S, )
10: VAR_008548 (T154M, chain S, )
11: VAR_002367 (V157G, chain R, )
12: VAR_002369 (R164Q, chain S, )
13: VAR_000320 (T168A, chain A/B/C/D, )
14: VAR_000321 (G170R, chain A/B/C/D, )
15: VAR_008547 (T171I, chain R, )
16: VAR_015957 (R181L, chain A/B/C/D, )
17: VAR_000322 (C219R, chain A/B/C/D, )
18: VAR_013699 (S220L, chain A/B/C/D, )
19: VAR_000323 (G242R, chain A/B/C/D, )
20: VAR_013700 (R256T, chain A/B/C/D, )
21: VAR_015958 (G285R, chain A/B/C/D, )
22: VAR_000324 (M301T, chain A/B/C/D, )
23: VAR_000325 (K304E, chain A/B/C/D, )
24: VAR_000326 (S311R, chain A/B/C/D, )
25: VAR_015959 (Y327C, chain A/B/C/D, )
26: VAR_000327 (I350T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000317
R
53
C
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
28
C
02
UniProt
VAR_013698
Y
67
H
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
Y
42
H
03
UniProt
VAR_015954
I
78
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
I
53
T
04
UniProt
VAR_015955
C
116
Y
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
C
91
Y
05
UniProt
VAR_015956
T
121
I
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
T
96
I
06
UniProt
VAR_035716
P
132
R
ACADM_HUMAN
Unclassified
---
A/B/C/D
P
107
R
07
UniProt
VAR_002366
G
116
R
ETFA_HUMAN
Disease (GA2A)
---
R
G
116
R
08
UniProt
VAR_000319
M
149
I
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
M
124
I
09
UniProt
VAR_025804
D
128
N
ETFB_HUMAN
Disease (GA2B)
---
S
D
128
N
10
UniProt
VAR_008548
T
154
M
ETFB_HUMAN
Polymorphism
1130426
S
T
154
M
11
UniProt
VAR_002367
V
157
G
ETFA_HUMAN
Disease (GA2A)
---
R
V
157
G
12
UniProt
VAR_002369
R
164
Q
ETFB_HUMAN
Disease (GA2B)
104894677
S
R
164
Q
13
UniProt
VAR_000320
T
193
A
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
T
168
A
14
UniProt
VAR_000321
G
195
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
170
R
15
UniProt
VAR_008547
T
171
I
ETFA_HUMAN
Polymorphism
1801591
R
T
171
I
16
UniProt
VAR_015957
R
206
L
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
181
L
17
UniProt
VAR_000322
C
244
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
C
219
R
18
UniProt
VAR_013699
S
245
L
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
S
220
L
19
UniProt
VAR_000323
G
267
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
242
R
20
UniProt
VAR_013700
R
281
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
256
T
21
UniProt
VAR_015958
G
310
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
285
R
22
UniProt
VAR_000324
M
326
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
M
301
T
23
UniProt
VAR_000325
K
329
E
ACADM_HUMAN
Disease (ACADMD)
77931234
A/B/C/D
K
304
E
24
UniProt
VAR_000326
S
336
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
S
311
R
25
UniProt
VAR_015959
Y
352
C
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
Y
327
C
26
UniProt
VAR_000327
I
375
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
I
350
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 9)
Info
All PROSITE Patterns/Profiles
1: ACYL_COA_DH_1 (A:134-146,B:134-146,C:134-146,D:13...)
2: ETF_BETA (S:162-182)
3: ACYL_COA_DH_2 (A:349-368,B:349-368,C:349-368,D:34...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYL_COA_DH_1
PS00072
Acyl-CoA dehydrogenases signature 1.
ACADM_HUMAN
159-171
4
A:134-146
B:134-146
C:134-146
D:134-146
2
ETF_BETA
PS01065
Electron transfer flavoprotein beta-subunit signature.
ETFB_HUMAN
162-182
1
S:162-182
3
ACYL_COA_DH_2
PS00073
Acyl-CoA dehydrogenases signature 2.
ACADM_HUMAN
374-393
4
A:349-368
B:349-368
C:349-368
D:349-368
[
close PROSITE info
]
Exons
(17, 50)
Info
All Exons
Exon 1.1 (S:4-19)
Exon 1.2b (S:20-72)
Exon 1.3 (S:73-125)
Exon 1.4 (S:126-146)
Exon 1.5 (S:147-199)
Exon 1.6 (S:200-231)
Exon 2.2b (A:10-15 | B:10-15 | C:9-15 | D:10-...)
Exon 2.3b (A:15-47 | B:15-47 | C:15-47 | D:15...)
Exon 2.4b (A:48-71 | B:48-71 | C:48-71 | D:48...)
Exon 2.4g (A:71-104 | B:71-104 | C:71-104 | D...)
Exon 2.5b (A:105-131 | B:105-131 | C:105-131 ...)
Exon 2.6 (A:132-175 | B:132-175 | C:132-175 ...)
Exon 2.7b (A:175-211 | B:175-211 | C:175-211 ...)
Exon 2.8d (A:212-258 | B:212-258 | C:212-258 ...)
Exon 2.9a (A:259-290 | B:259-290 | C:259-290 ...)
Exon 2.12c (A:291-373 | B:291-373 | C:291-373 ...)
Exon 2.13f (A:374-395 | B:374-396 | C:374-396 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2b
03: Boundary 1.2b/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/-
08: Boundary 2.1a/2.2b
09: Boundary 2.2b/2.3b
10: Boundary 2.3b/2.4b
11: Boundary 2.4b/2.4g
12: Boundary 2.4g/2.5b
13: Boundary 2.5b/2.6
14: Boundary 2.6/2.7b
15: Boundary 2.7b/2.8d
16: Boundary 2.8d/2.9a
17: Boundary 2.9a/2.12c
18: Boundary 2.12c/2.13f
19: Boundary 2.13f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000309244
1
ENSE00001384271
chr19:
51869672-51869524
149
ETFB_HUMAN
1-19
19
1
S:4-19
16
1.2b
ENST00000309244
2b
ENSE00001225639
chr19:
51857562-51857404
159
ETFB_HUMAN
20-72
53
1
S:20-72
53
1.3
ENST00000309244
3
ENSE00000722381
chr19:
51856544-51856386
159
ETFB_HUMAN
73-125
53
1
S:73-125
53
1.4
ENST00000309244
4
ENSE00000722391
chr19:
51853645-51853583
63
ETFB_HUMAN
126-146
21
1
S:126-146
21
1.5
ENST00000309244
5
ENSE00000722401
chr19:
51850312-51850154
159
ETFB_HUMAN
147-199
53
1
S:147-199
53
1.6
ENST00000309244
6
ENSE00001471664
chr19:
51848635-51848410
226
ETFB_HUMAN
200-255
56
1
S:200-231
32
2.1a
ENST00000370841
1a
ENSE00001844831
chr1:
76190036-76190502
467
ACADM_HUMAN
1-10
10
0
-
-
2.2b
ENST00000370841
2b
ENSE00000830661
chr1:
76194086-76194173
88
ACADM_HUMAN
11-40
30
4
A:10-15
B:10-15
C:9-15
D:10-15
6
6
7
6
2.3b
ENST00000370841
3b
ENSE00000830662
chr1:
76198329-76198426
98
ACADM_HUMAN
40-72
33
4
A:15-47
B:15-47
C:15-47
D:15-47
33
33
33
33
2.4b
ENST00000370841
4b
ENSE00000830663
chr1:
76198538-76198607
70
ACADM_HUMAN
73-96
24
4
A:48-71
B:48-71
C:48-71
D:48-71
24
24
24
24
2.4g
ENST00000370841
4g
ENSE00000830664
chr1:
76199213-76199313
101
ACADM_HUMAN
96-129
34
4
A:71-104
B:71-104
C:71-104
D:71-104
34
34
34
34
2.5b
ENST00000370841
5b
ENSE00000830665
chr1:
76200476-76200556
81
ACADM_HUMAN
130-156
27
4
A:105-131
B:105-131
C:105-131
D:105-131
27
27
27
27
2.6
ENST00000370841
6
ENSE00000830666
chr1:
76205665-76205795
131
ACADM_HUMAN
157-200
44
4
A:132-175
B:132-175
C:132-175
D:132-175
44
44
44
44
2.7b
ENST00000370841
7b
ENSE00000830671
chr1:
76211491-76211599
109
ACADM_HUMAN
200-236
37
4
A:175-211
B:175-211
C:175-211
D:175-211
37
37
37
37
2.8d
ENST00000370841
8d
ENSE00000931972
chr1:
76215104-76215244
141
ACADM_HUMAN
237-283
47
4
A:212-258
B:212-258
C:212-258
D:212-258
47
47
47
47
2.9a
ENST00000370841
9a
ENSE00000931973
chr1:
76216136-76216231
96
ACADM_HUMAN
284-315
32
4
A:259-290
B:259-290
C:259-290
D:259-290
32
32
32
32
2.12c
ENST00000370841
12c
ENSE00000931974
chr1:
76226807-76227055
249
ACADM_HUMAN
316-398
83
4
A:291-373
B:291-373
C:291-373
D:291-373
83
83
83
83
2.13f
ENST00000370841
13f
ENSE00001513957
chr1:
76228377-76229364
988
ACADM_HUMAN
399-421
23
4
A:374-395
B:374-396
C:374-396
D:374-396
22
23
23
23
[
close EXON info
]
SCOP Domains
(4, 10)
Info
All SCOP Domains
1a: SCOP_d1t9ga1 (A:242-395)
1b: SCOP_d1t9gb1 (B:242-395)
1c: SCOP_d1t9gc1 (C:242-395)
1d: SCOP_d1t9gd1 (D:242-395)
2a: SCOP_d1t9gr_ (R:)
3a: SCOP_d1t9gs_ (S:)
4a: SCOP_d1t9ga2 (A:10-241)
4b: SCOP_d1t9gb2 (B:10-241)
4c: SCOP_d1t9gc2 (C:10-241)
4d: SCOP_d1t9gd2 (D:10-241)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
(29)
Protein domain
:
Medium chain acyl-CoA dehydrogenase, C-domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1t9ga1
A:242-395
1b
d1t9gb1
B:242-395
1c
d1t9gc1
C:242-395
1d
d1t9gd1
D:242-395
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
ETFP subunits
(25)
Protein domain
:
Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
(11)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1t9gr_
R:
Protein domain
:
Small, beta subunit of electron transfer flavoprotein ETFP
(12)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d1t9gs_
S:
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
(32)
Protein domain
:
Medium chain acyl-CoA dehydrogenase, NM domains
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
4a
d1t9ga2
A:10-241
4b
d1t9gb2
B:10-241
4c
d1t9gc2
C:10-241
4d
d1t9gd2
D:10-241
[
close SCOP info
]
CATH Domains
(4, 14)
Info
all CATH domains
1a: CATH_1t9gR00 (R:20-203)
1b: CATH_1t9gS00 (S:4-231)
2a: CATH_1t9gA01 (A:12-130)
2b: CATH_1t9gB01 (B:12-130)
2c: CATH_1t9gC01 (C:12-130)
2d: CATH_1t9gD01 (D:12-130)
3a: CATH_1t9gA03 (A:252-392)
3b: CATH_1t9gB03 (B:252-392)
3c: CATH_1t9gC03 (C:252-392)
3d: CATH_1t9gD03 (D:252-392)
4a: CATH_1t9gA02 (A:131-251)
4b: CATH_1t9gB02 (B:131-251)
4c: CATH_1t9gC02 (C:131-251)
4d: CATH_1t9gD02 (D:131-251)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Human (Homo sapiens)
(27)
1a
1t9gR00
R:20-203
1b
1t9gS00
S:4-231
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Butyryl-Coa Dehydrogenase, subunit A; domain 1
(28)
Homologous Superfamily
:
Butyryl-Coa Dehydrogenase, subunit A, domain 1
(28)
Human (Homo sapiens)
(10)
2a
1t9gA01
A:12-130
2b
1t9gB01
B:12-130
2c
1t9gC01
C:12-130
2d
1t9gD01
D:12-130
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Human (Homo sapiens)
(13)
3a
1t9gA03
A:252-392
3b
1t9gB03
B:252-392
3c
1t9gC03
C:252-392
3d
1t9gD03
D:252-392
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 2
(35)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 2
(35)
Human (Homo sapiens)
(14)
4a
1t9gA02
A:131-251
4b
1t9gB02
B:131-251
4c
1t9gC02
C:131-251
4d
1t9gD02
D:131-251
[
close CATH info
]
Pfam Domains
(4, 14)
Info
all PFAM domains
1a: PFAM_Acyl_CoA_dh_1_1t9gD01 (D:242-391)
1b: PFAM_Acyl_CoA_dh_1_1t9gD02 (D:242-391)
1c: PFAM_Acyl_CoA_dh_1_1t9gD03 (D:242-391)
1d: PFAM_Acyl_CoA_dh_1_1t9gD04 (D:242-391)
2a: PFAM_ETF_1t9gR01 (R:21-175)
2b: PFAM_ETF_1t9gS01 (S:26-190)
3a: PFAM_Acyl_CoA_dh_M_1t9gD05 (D:132-183)
3b: PFAM_Acyl_CoA_dh_M_1t9gD06 (D:132-183)
3c: PFAM_Acyl_CoA_dh_M_1t9gD07 (D:132-183)
3d: PFAM_Acyl_CoA_dh_M_1t9gD08 (D:132-183)
4a: PFAM_Acyl_CoA_dh_N_1t9gD09 (D:17-128)
4b: PFAM_Acyl_CoA_dh_N_1t9gD10 (D:17-128)
4c: PFAM_Acyl_CoA_dh_N_1t9gD11 (D:17-128)
4d: PFAM_Acyl_CoA_dh_N_1t9gD12 (D:17-128)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
Acyl-CoA_dh_1
(24)
Homo sapiens (Human)
(10)
1a
Acyl-CoA_dh_1-1t9gD01
D:242-391
1b
Acyl-CoA_dh_1-1t9gD02
D:242-391
1c
Acyl-CoA_dh_1-1t9gD03
D:242-391
1d
Acyl-CoA_dh_1-1t9gD04
D:242-391
Clan
:
HUP
(230)
Family
:
ETF
(4)
Homo sapiens (Human)
(1)
2a
ETF-1t9gR01
R:21-175
2b
ETF-1t9gS01
S:26-190
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Homo sapiens (Human)
(10)
3a
Acyl-CoA_dh_M-1t9gD05
D:132-183
3b
Acyl-CoA_dh_M-1t9gD06
D:132-183
3c
Acyl-CoA_dh_M-1t9gD07
D:132-183
3d
Acyl-CoA_dh_M-1t9gD08
D:132-183
Clan
:
no clan defined [family: Acyl-CoA_dh_N]
(23)
Family
:
Acyl-CoA_dh_N
(23)
Homo sapiens (Human)
(10)
4a
Acyl-CoA_dh_N-1t9gD09
D:17-128
4b
Acyl-CoA_dh_N-1t9gD10
D:17-128
4c
Acyl-CoA_dh_N-1t9gD11
D:17-128
4d
Acyl-CoA_dh_N-1t9gD12
D:17-128
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain R
Chain S
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (310 KB)
Header - Asym.Unit
Biol.Unit 1 (301 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1T9G
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help