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1T6S
Biol. Unit 1
Info
Asym.Unit (62 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (112 KB)
Biol.Unit 3 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN FROM CHLOROBIUM TEPIDUM
Authors
:
J. S. Kim, D. H. Shin, R. Kim, S. H. Kim, Berkeley Structural Genomics (Bsgc)
Date
:
07 May 04 (Deposition) - 07 Dec 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Biol. Unit 3: A,B (1x)
Keywords
:
A Winged Helix-Turn-Helix, Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Kim, D. H. Shin, R. Pufan, C. Huang, H. Yokota, R. Kim, S. H. Kim
Crystal Structure Of Scpb From Chlorobium Tepidum, A Protei Involved In Chromosome Partitioning.
Proteins V. 62 322 2006
[
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Hetero Components
(1, 21)
Info
All Hetero Components
1a: NITRATE ION (NO3a)
1b: NITRATE ION (NO3b)
1c: NITRATE ION (NO3c)
1d: NITRATE ION (NO3d)
1e: NITRATE ION (NO3e)
1f: NITRATE ION (NO3f)
1g: NITRATE ION (NO3g)
1h: NITRATE ION (NO3h)
1i: NITRATE ION (NO3i)
1j: NITRATE ION (NO3j)
1k: NITRATE ION (NO3k)
1l: NITRATE ION (NO3l)
1m: NITRATE ION (NO3m)
1n: NITRATE ION (NO3n)
1o: NITRATE ION (NO3o)
1p: NITRATE ION (NO3p)
1q: NITRATE ION (NO3q)
1r: NITRATE ION (NO3r)
1s: NITRATE ION (NO3s)
1t: NITRATE ION (NO3t)
1u: NITRATE ION (NO3u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NO3
21
Ligand/Ion
NITRATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:104 , GLN A:107 , THR A:152 , PHE A:156 , GLN B:89 , SER B:93
BINDING SITE FOR RESIDUE NO3 B 401
02
AC2
SOFTWARE
GLN A:26 , LYS A:111 , ASP A:123 , TYR A:124 , SER A:125 , ILE A:126 , ASP A:127 , NO3 A:421
BINDING SITE FOR RESIDUE NO3 A 402
03
AC3
SOFTWARE
SER A:19 , GLU A:20 , GLU A:21 , GLU A:154 , HOH A:431
BINDING SITE FOR RESIDUE NO3 A 403
04
AC4
SOFTWARE
ARG A:91 , ARG A:94 , SER A:95
BINDING SITE FOR RESIDUE NO3 A 404
05
AC5
SOFTWARE
GLN A:82 , PRO A:86 , VAL A:87 , GLU B:3
BINDING SITE FOR RESIDUE NO3 A 405
06
AC6
SOFTWARE
PRO A:38 , THR A:110 , LYS A:111 , GLY A:112 , PRO A:147 , HOH A:450
BINDING SITE FOR RESIDUE NO3 A 406
07
AC7
SOFTWARE
GLN A:42 , VAL A:45 , ILE A:61 , HIS A:62 , ALA A:63 , NO3 A:420 , HOH A:435
BINDING SITE FOR RESIDUE NO3 A 407
08
AC8
SOFTWARE
GLN A:89 , ARG A:90 , SER A:93 , ALA B:104 , GLN B:107 , THR B:152 , PHE B:156
BINDING SITE FOR RESIDUE NO3 A 408
09
AC9
SOFTWARE
GLN B:26 , LYS B:111 , ASP B:123 , TYR B:124 , SER B:125 , ILE B:126 , ASP B:127
BINDING SITE FOR RESIDUE NO3 B 409
10
BC1
SOFTWARE
SER B:19 , GLU B:20 , GLU B:21 , GLU B:154 , HOH B:428
BINDING SITE FOR RESIDUE NO3 B 410
11
BC2
SOFTWARE
ARG B:91 , ARG B:94 , SER B:95 , GLU B:98 , ARG B:118
BINDING SITE FOR RESIDUE NO3 B 411
12
BC3
SOFTWARE
PRO B:38 , THR B:110 , LYS B:111 , GLY B:112 , PRO B:147 , HOH B:445
BINDING SITE FOR RESIDUE NO3 B 412
13
BC4
SOFTWARE
PRO B:86 , VAL B:87
BINDING SITE FOR RESIDUE NO3 B 413
14
BC5
SOFTWARE
GLN B:42 , VAL B:45 , ILE B:61 , HIS B:62 , ALA B:63 , TYR B:68 , NO3 B:419 , HOH B:431
BINDING SITE FOR RESIDUE NO3 B 414
15
BC6
SOFTWARE
GLU A:40
BINDING SITE FOR RESIDUE NO3 A 416
16
BC7
SOFTWARE
GLU A:98 , HOH A:448 , TRP B:105 , HIS B:106 , ILE B:117
BINDING SITE FOR RESIDUE NO3 B 417
17
BC8
SOFTWARE
ARG A:140 , HIS B:62 , ALA B:63 , ILE B:64 , NO3 B:414
BINDING SITE FOR RESIDUE NO3 B 419
18
BC9
SOFTWARE
HIS A:62 , ALA A:63 , ILE A:64 , NO3 A:407 , ARG B:140
BINDING SITE FOR RESIDUE NO3 A 420
19
CC1
SOFTWARE
GLN A:26 , LYS A:111 , NO3 A:402
BINDING SITE FOR RESIDUE NO3 A 421
20
CC2
SOFTWARE
ALA A:77 , ARG A:81 , GLN B:107 , PRO B:108 , ARG B:138
BINDING SITE FOR RESIDUE NO3 B 422
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1t6sa1 (A:1-85)
1b: SCOP_d1t6sa2 (A:86-162)
1c: SCOP_d1t6sb1 (B:1-85)
1d: SCOP_d1t6sb2 (B:86-162)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
ScpB/YpuH-like
(1)
Protein domain
:
Segregation and condensation protein B, ScpB
(1)
Chlorobium tepidum [TaxId: 1097]
(1)
1a
d1t6sa1
A:1-85
1b
d1t6sa2
A:86-162
1c
d1t6sb1
B:1-85
1d
d1t6sb2
B:86-162
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1t6sB01 (B:1-85)
1b: CATH_1t6sA01 (A:1-86)
1c: CATH_1t6sB02 (B:86-162)
1d: CATH_1t6sA02 (A:87-162)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Chlorobium tepidum tls. Organism_taxid: 194439.
(1)
1a
1t6sB01
B:1-85
1b
1t6sA01
A:1-86
1c
1t6sB02
B:86-162
1d
1t6sA02
A:87-162
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DUF387_1t6sB01 (B:10-162)
1b: PFAM_DUF387_1t6sB02 (B:10-162)
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)
Clan
:
HTH
(544)
Family
:
DUF387
(1)
Chlorobium tepidum
(1)
1a
DUF387-1t6sB01
B:10-162
1b
DUF387-1t6sB02
B:10-162
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Asymmetric Unit 1
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Asym.Unit (62 KB)
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