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1T36
Asym. Unit
Info
Asym.Unit (1000 KB)
Biol.Unit 1 (985 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI CARBAMOYL PHOSPHATE SYNTHETASE SMALL SUBUNIT MUTANT C248D COMPLEXED WITH URIDINE 5'-MONOPHOSPHATE
Authors
:
J. B. Thoden, X. Huang, F. M. Raushel, H. M. Holden
Date
:
24 Apr 04 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Channeling, Pyrimidine Biosynthesis, Arginine Biosynthesis, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, X. Huang, J. Kim, F. M. Raushel, H. M. Holden
Long-Range Allosteric Transitions In Carbamoyl Phosphate Synthetase.
Protein Sci. V. 13 2398 2004
[
close entry info
]
Hetero Components
(8, 86)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
2a: CHLORIDE ION (CLa)
2aa: CHLORIDE ION (CLaa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
2w: CHLORIDE ION (CLw)
2x: CHLORIDE ION (CLx)
2y: CHLORIDE ION (CLy)
2z: CHLORIDE ION (CLz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
3k: POTASSIUM ION (Kk)
3l: POTASSIUM ION (Kl)
3m: POTASSIUM ION (Km)
3n: POTASSIUM ION (Kn)
3o: POTASSIUM ION (Ko)
3p: POTASSIUM ION (Kp)
3q: POTASSIUM ION (Kq)
3r: POTASSIUM ION (Kr)
3s: POTASSIUM ION (Ks)
3t: POTASSIUM ION (Kt)
3u: POTASSIUM ION (Ku)
3v: POTASSIUM ION (Kv)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
4d: MANGANESE (II) ION (MNd)
4e: MANGANESE (II) ION (MNe)
4f: MANGANESE (II) ION (MNf)
4g: MANGANESE (II) ION (MNg)
4h: MANGANESE (II) ION (MNh)
4i: MANGANESE (II) ION (MNi)
4j: MANGANESE (II) ION (MNj)
4k: MANGANESE (II) ION (MNk)
4l: MANGANESE (II) ION (MNl)
5a: TETRAETHYLAMMONIUM ION (NETa)
5b: TETRAETHYLAMMONIUM ION (NETb)
5c: TETRAETHYLAMMONIUM ION (NETc)
5d: TETRAETHYLAMMONIUM ION (NETd)
6a: L-ORNITHINE (ORNa)
6b: L-ORNITHINE (ORNb)
6c: L-ORNITHINE (ORNc)
6d: L-ORNITHINE (ORNd)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
7e: PHOSPHATE ION (PO4e)
8a: URIDINE-5'-MONOPHOSPHATE (Ua)
8b: URIDINE-5'-MONOPHOSPHATE (Ub)
8c: URIDINE-5'-MONOPHOSPHATE (Uc)
8d: URIDINE-5'-MONOPHOSPHATE (Ud)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
8
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
27
Ligand/Ion
CHLORIDE ION
3
K
22
Ligand/Ion
POTASSIUM ION
4
MN
12
Ligand/Ion
MANGANESE (II) ION
5
NET
4
Ligand/Ion
TETRAETHYLAMMONIUM ION
6
ORN
4
Ligand/Ion
L-ORNITHINE
7
PO4
5
Ligand/Ion
PHOSPHATE ION
8
U
4
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
[
close Hetero Component info
]
Sites
(86, 86)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:299 , ASN A:301 , PO4 A:1078 , ADP A:1087 , HOH A:1191
BINDING SITE FOR RESIDUE MN A 1074
02
AC2
SOFTWARE
GLN A:285 , GLU A:299 , PO4 A:1078 , ADP A:1087 , HOH A:1605
BINDING SITE FOR RESIDUE MN A 1075
03
AC3
SOFTWARE
GLU A:215 , ASN A:236 , ASP A:238 , ALA A:239 , ILE A:242 , SER A:247
BINDING SITE FOR RESIDUE K A 1076
04
AC4
SOFTWARE
ALA A:126 , GLU A:127 , GLU A:299 , MET A:300 , ASN A:301 , HOH A:1193 , HOH A:1607
BINDING SITE FOR RESIDUE K A 1077
05
AC5
SOFTWARE
MET A:174 , GLY A:175 , HIS A:243 , GLN A:285 , GLU A:299 , ASN A:301 , ARG A:303 , ARG A:306 , MN A:1074 , MN A:1075 , ADP A:1087 , HOH A:1130 , HOH A:1305 , HOH A:1306
BINDING SITE FOR RESIDUE PO4 A 1078
06
AC6
SOFTWARE
GLN A:829 , GLU A:841 , ADP A:1088 , HOH A:1608 , HOH A:1903
BINDING SITE FOR RESIDUE MN A 1079
07
AC7
SOFTWARE
GLU A:761 , HIS A:781 , GLU A:783 , GLN A:784 , VAL A:787 , SER A:792
BINDING SITE FOR RESIDUE K A 1080
08
AC8
SOFTWARE
GLN A:93 , MET A:174
BINDING SITE FOR RESIDUE CL A 1081
09
AC9
SOFTWARE
THR A:143 , ALA A:144 , HOH A:1202 , HOH A:1203 , HOH A:1204
BINDING SITE FOR RESIDUE K A 1082
10
BC1
SOFTWARE
TRP A:71 , HOH A:1622
BINDING SITE FOR RESIDUE CL A 1083
11
BC2
SOFTWARE
ASN A:289 , ASN A:292 , ARG A:294
BINDING SITE FOR RESIDUE CL A 1084
12
BC3
SOFTWARE
ALA A:370 , ASN A:371 , PHE A:900 , PRO A:901 , GLY A:902
BINDING SITE FOR RESIDUE CL A 1085
13
BC4
SOFTWARE
LYS A:475 , ASN A:485 , PHE A:488
BINDING SITE FOR RESIDUE CL A 1086
14
BC5
SOFTWARE
HOH A:1456 , HOH A:1457 , HIS B:16 , ASP B:112 , HOH B:3394 , HOH B:3605
BINDING SITE FOR RESIDUE K B 383
15
BC6
SOFTWARE
GLU C:299 , ASN C:301 , MN C:1075 , PO4 C:1078 , ADP C:1089 , HOH C:1191
BINDING SITE FOR RESIDUE MN C 1074
16
BC7
SOFTWARE
GLN C:285 , GLU C:299 , MN C:1074 , PO4 C:1078 , ADP C:1089 , HOH C:1587
BINDING SITE FOR RESIDUE MN C 1075
17
BC8
SOFTWARE
GLU C:215 , ASN C:236 , ASP C:238 , ALA C:239 , ILE C:242 , SER C:247
BINDING SITE FOR RESIDUE K C 1076
18
BC9
SOFTWARE
ALA C:126 , GLU C:127 , GLU C:299 , MET C:300 , ASN C:301 , HOH C:1193
BINDING SITE FOR RESIDUE K C 1077
19
CC1
SOFTWARE
MET C:174 , GLY C:175 , HIS C:243 , GLN C:285 , GLU C:299 , ASN C:301 , ARG C:303 , ARG C:306 , MN C:1074 , MN C:1075 , ADP C:1089 , HOH C:1191 , HOH C:1301
BINDING SITE FOR RESIDUE PO4 C 1078
20
CC2
SOFTWARE
GLN C:829 , GLU C:841 , ADP C:1090 , HOH C:1589 , HOH C:1590
BINDING SITE FOR RESIDUE MN C 1079
21
CC3
SOFTWARE
GLU C:761 , HIS C:781 , GLU C:783 , GLN C:784 , VAL C:787 , SER C:792
BINDING SITE FOR RESIDUE K C 1080
22
CC4
SOFTWARE
THR C:173 , MET C:174 , HOH C:1127
BINDING SITE FOR RESIDUE CL C 1081
23
CC5
SOFTWARE
THR C:143 , ALA C:144 , HOH C:1201 , HOH C:1202
BINDING SITE FOR RESIDUE K C 1082
24
CC6
SOFTWARE
TRP C:71
BINDING SITE FOR RESIDUE CL C 1083
25
CC7
SOFTWARE
ASN C:289 , ASN C:292 , ARG C:294
BINDING SITE FOR RESIDUE CL C 1084
26
CC8
SOFTWARE
ALA C:370 , ASN C:371 , PHE C:900 , PRO C:901 , GLY C:902
BINDING SITE FOR RESIDUE CL C 1085
27
CC9
SOFTWARE
LYS C:475 , ASN C:485 , HOH C:1607
BINDING SITE FOR RESIDUE CL C 1086
28
DC1
SOFTWARE
HOH C:1451 , HIS D:16 , ASP D:112 , HOH D:2331 , HOH D:2536
BINDING SITE FOR RESIDUE K D 383
29
DC2
SOFTWARE
GLU C:549 , PHE D:15 , ASP D:114 , HOH D:2330
BINDING SITE FOR RESIDUE CL D 384
30
DC3
SOFTWARE
PHE C:578 , ARG C:845 , ALA C:847 , ARG C:848
BINDING SITE FOR RESIDUE CL C 1087
31
DC4
SOFTWARE
GLU C:560 , ASP C:592
BINDING SITE FOR RESIDUE PO4 C 1088
32
DC5
SOFTWARE
GLU E:299 , ASN E:301 , PO4 E:1078 , ADP E:1089 , HOH E:1193
BINDING SITE FOR RESIDUE MN E 1074
33
DC6
SOFTWARE
GLN E:285 , GLU E:299 , PO4 E:1078 , ADP E:1089 , HOH E:1597
BINDING SITE FOR RESIDUE MN E 1075
34
DC7
SOFTWARE
GLU E:215 , ASN E:236 , ASP E:238 , ALA E:239 , ILE E:242 , SER E:247
BINDING SITE FOR RESIDUE K E 1076
35
DC8
SOFTWARE
ALA E:126 , GLU E:127 , GLU E:299 , MET E:300 , ASN E:301 , HOH E:1193 , HOH E:1195
BINDING SITE FOR RESIDUE K E 1077
36
DC9
SOFTWARE
MET E:174 , GLY E:175 , HIS E:243 , GLN E:285 , GLU E:299 , ASN E:301 , ARG E:303 , ARG E:306 , MN E:1074 , MN E:1075 , ADP E:1089 , HOH E:1129 , HOH E:1303
BINDING SITE FOR RESIDUE PO4 E 1078
37
EC1
SOFTWARE
GLN E:829 , GLU E:841 , ADP E:1090 , HOH E:1601 , HOH E:1602
BINDING SITE FOR RESIDUE MN E 1079
38
EC2
SOFTWARE
GLU E:761 , HIS E:781 , GLU E:783 , GLN E:784 , VAL E:787 , SER E:792
BINDING SITE FOR RESIDUE K E 1080
39
EC3
SOFTWARE
ASP E:84 , GLY E:112 , THR E:114 , HOH E:1095 , HOH E:1605
BINDING SITE FOR RESIDUE K E 1081
40
EC4
SOFTWARE
THR E:173 , MET E:174
BINDING SITE FOR RESIDUE CL E 1082
41
EC5
SOFTWARE
THR E:143 , ALA E:144 , HOH E:1202 , HOH E:1203
BINDING SITE FOR RESIDUE K E 1083
42
EC6
SOFTWARE
TRP E:71
BINDING SITE FOR RESIDUE CL E 1084
43
EC7
SOFTWARE
ASN E:289 , ASN E:292 , ARG E:294
BINDING SITE FOR RESIDUE CL E 1085
44
EC8
SOFTWARE
ALA E:370 , ASN E:371 , PHE E:900 , PRO E:901 , GLY E:902
BINDING SITE FOR RESIDUE CL E 1086
45
EC9
SOFTWARE
LYS E:475 , ASN E:485 , HOH E:1614
BINDING SITE FOR RESIDUE CL E 1087
46
FC1
SOFTWARE
HOH E:1447 , HIS F:16 , ASP F:112 , HOH F:1308
BINDING SITE FOR RESIDUE K F 383
47
FC2
SOFTWARE
GLU E:549 , HOH E:1447 , PHE F:15 , ASP F:114 , HOH F:1307
BINDING SITE FOR RESIDUE CL F 384
48
FC3
SOFTWARE
ALA E:847 , ARG E:848
BINDING SITE FOR RESIDUE CL E 1088
49
FC4
SOFTWARE
MET G:174 , GLU G:299 , ASN G:301 , MN G:1075 , PO4 G:1078 , ADP G:1089 , HOH G:1190
BINDING SITE FOR RESIDUE MN G 1074
50
FC5
SOFTWARE
GLN G:285 , GLU G:299 , MN G:1074 , PO4 G:1078 , ADP G:1089 , HOH G:1549
BINDING SITE FOR RESIDUE MN G 1075
51
FC6
SOFTWARE
GLU G:215 , ASN G:236 , ASP G:238 , ALA G:239 , ILE G:242 , SER G:247
BINDING SITE FOR RESIDUE K G 1076
52
FC7
SOFTWARE
ALA G:126 , GLU G:127 , GLU G:299 , MET G:300 , ASN G:301 , HOH G:1190 , HOH G:1191
BINDING SITE FOR RESIDUE K G 1077
53
FC8
SOFTWARE
MET G:174 , GLY G:175 , HIS G:243 , GLN G:285 , GLU G:299 , ASN G:301 , ARG G:303 , ARG G:306 , MN G:1074 , MN G:1075 , ADP G:1089 , HOH G:1130 , HOH G:1289 , HOH G:1549
BINDING SITE FOR RESIDUE PO4 G 1078
54
FC9
SOFTWARE
GLN G:829 , GLU G:841 , ADP G:1090 , HOH G:1550 , HOH G:1551
BINDING SITE FOR RESIDUE MN G 1079
55
GC1
SOFTWARE
GLU G:761 , HIS G:781 , GLU G:783 , GLN G:784 , VAL G:787 , SER G:792
BINDING SITE FOR RESIDUE K G 1080
56
GC2
SOFTWARE
ASP G:84 , GLY G:112 , THR G:114
BINDING SITE FOR RESIDUE K G 1081
57
GC3
SOFTWARE
GLN G:93 , THR G:173 , MET G:174 , NET G:1092 , HOH G:1122
BINDING SITE FOR RESIDUE CL G 1082
58
GC4
SOFTWARE
THR G:143 , ALA G:144 , HOH G:1198 , HOH G:1199
BINDING SITE FOR RESIDUE K G 1083
59
GC5
SOFTWARE
TRP G:71
BINDING SITE FOR RESIDUE CL G 1084
60
GC6
SOFTWARE
ASN G:289 , ASN G:292 , ARG G:294
BINDING SITE FOR RESIDUE CL G 1085
61
GC7
SOFTWARE
ASN G:371 , PHE G:900 , PRO G:901 , GLY G:902 , HOH G:1246
BINDING SITE FOR RESIDUE CL G 1086
62
GC8
SOFTWARE
LYS G:475 , ASN G:485 , PHE G:488 , HOH G:1419
BINDING SITE FOR RESIDUE CL G 1087
63
GC9
SOFTWARE
HOH G:1422 , HOH G:1423 , HIS H:16 , ASP H:112
BINDING SITE FOR RESIDUE K H 383
64
HC1
SOFTWARE
PHE H:15 , ASP H:114
BINDING SITE FOR RESIDUE CL H 384
65
HC2
SOFTWARE
ARG G:845 , ALA G:847 , ARG G:848
BINDING SITE FOR RESIDUE CL G 1088
66
HC3
SOFTWARE
TRP H:170 , THR H:171 , GLN H:172
BINDING SITE FOR RESIDUE CL H 385
67
HC4
SOFTWARE
ARG A:129 , ILE A:167 , ARG A:169 , THR A:173 , MET A:174 , GLY A:175 , GLY A:176 , ASP A:207 , GLU A:208 , LEU A:210 , ILE A:211 , GLU A:215 , MET A:240 , GLY A:241 , ILE A:242 , HIS A:243 , THR A:244 , GLN A:285 , ILE A:298 , GLU A:299 , THR A:376 , MN A:1074 , MN A:1075 , PO4 A:1078 , HOH A:1191 , HOH A:1231 , HOH A:1244 , HOH A:1605
BINDING SITE FOR RESIDUE ADP A 1087
68
HC5
SOFTWARE
PRO A:690 , ARG A:715 , MET A:725 , HIS A:754 , PHE A:755 , LEU A:756 , GLU A:761 , ALA A:785 , GLY A:786 , VAL A:787 , HIS A:788 , SER A:789 , GLN A:829 , GLU A:841 , PRO A:909 , MN A:1079 , HOH A:1499 , HOH A:1522 , HOH A:1526 , HOH A:1608 , HOH A:1609 , HOH A:1903
BINDING SITE FOR RESIDUE ADP A 1088
69
HC6
SOFTWARE
GLU A:783 , ASP A:791 , ALA A:793 , GLU A:892 , LEU A:907 , TYR A:1040 , ASP A:1041 , THR A:1042 , HOH A:1538 , HOH A:1564
BINDING SITE FOR RESIDUE ORN A 1089
70
HC7
SOFTWARE
THR A:94 , ASN A:97 , ASN A:936
BINDING SITE FOR RESIDUE NET A 1090
71
HC8
SOFTWARE
SER A:948 , VAL A:949 , LYS A:954 , THR A:974 , GLY A:976 , THR A:977 , LYS A:993 , ASN A:1015 , THR A:1016 , THR A:1017 , ASP A:1025 , SER A:1026 , ILE A:1029 , HOH A:1590
BINDING SITE FOR RESIDUE U A 1091
72
HC9
SOFTWARE
ARG C:129 , ILE C:167 , ARG C:169 , THR C:173 , MET C:174 , GLY C:175 , GLY C:176 , GLU C:208 , SER C:209 , LEU C:210 , ILE C:211 , GLU C:215 , MET C:240 , GLY C:241 , ILE C:242 , HIS C:243 , THR C:244 , GLN C:285 , ILE C:298 , GLU C:299 , THR C:376 , MN C:1074 , MN C:1075 , PO4 C:1078 , HOH C:1191 , HOH C:1229 , HOH C:1244 , HOH C:1587
BINDING SITE FOR RESIDUE ADP C 1089
73
IC1
SOFTWARE
ARG C:715 , MET C:725 , HIS C:754 , PHE C:755 , LEU C:756 , GLU C:761 , ALA C:785 , GLY C:786 , VAL C:787 , HIS C:788 , SER C:789 , GLN C:829 , GLU C:841 , MN C:1079 , HOH C:1515 , HOH C:1516 , HOH C:1589 , HOH C:1590
BINDING SITE FOR RESIDUE ADP C 1090
74
IC2
SOFTWARE
GLU C:783 , ASP C:791 , GLU C:892 , LEU C:907 , TYR C:1040 , ASP C:1041 , THR C:1042 , HOH C:1530 , HOH C:1548
BINDING SITE FOR RESIDUE ORN C 1091
75
IC3
SOFTWARE
THR C:94 , ASN C:97
BINDING SITE FOR RESIDUE NET C 1092
76
IC4
SOFTWARE
SER C:948 , VAL C:949 , LYS C:954 , THR C:974 , GLY C:976 , THR C:977 , LYS C:993 , ASN C:1015 , THR C:1016 , THR C:1017 , ALA C:1022 , SER C:1026 , ILE C:1029 , HOH C:1576 , HOH C:1846
BINDING SITE FOR RESIDUE U C 1093
77
IC5
SOFTWARE
ARG E:129 , ILE E:167 , ARG E:169 , MET E:174 , GLY E:175 , GLY E:176 , GLU E:208 , LEU E:210 , ILE E:211 , GLU E:215 , MET E:240 , GLY E:241 , ILE E:242 , HIS E:243 , THR E:244 , GLN E:285 , ILE E:298 , GLU E:299 , THR E:376 , MN E:1074 , MN E:1075 , PO4 E:1078 , HOH E:1193 , HOH E:1227 , HOH E:1244 , HOH E:1597
BINDING SITE FOR RESIDUE ADP E 1089
78
IC6
SOFTWARE
PRO E:690 , ARG E:715 , MET E:725 , HIS E:754 , PHE E:755 , LEU E:756 , GLU E:761 , ALA E:785 , GLY E:786 , VAL E:787 , HIS E:788 , SER E:789 , GLN E:829 , GLU E:841 , MN E:1079 , HOH E:1520 , HOH E:1521 , HOH E:1525 , HOH E:1598 , HOH E:1599 , HOH E:1600 , HOH E:1602
BINDING SITE FOR RESIDUE ADP E 1090
79
IC7
SOFTWARE
GLU E:783 , ASP E:791 , GLU E:892 , LEU E:907 , TYR E:1040 , ASP E:1041 , THR E:1042 , HOH E:1537 , HOH E:1560 , HOH E:1570
BINDING SITE FOR RESIDUE ORN E 1091
80
IC8
SOFTWARE
GLN E:22 , GLN E:93 , THR E:94
BINDING SITE FOR RESIDUE NET E 1092
81
IC9
SOFTWARE
SER E:948 , VAL E:949 , ARG E:950 , LYS E:954 , THR E:974 , GLY E:976 , THR E:977 , LYS E:993 , ASN E:1015 , THR E:1016 , THR E:1017 , ASP E:1025 , SER E:1026 , ILE E:1029 , HOH E:1585 , HOH E:1839 , HOH E:1847
BINDING SITE FOR RESIDUE U E 1093
82
JC1
SOFTWARE
ARG G:129 , ILE G:167 , ARG G:169 , THR G:173 , MET G:174 , GLY G:175 , GLY G:176 , GLU G:208 , LEU G:210 , ILE G:211 , GLU G:215 , MET G:240 , GLY G:241 , ILE G:242 , HIS G:243 , THR G:244 , GLN G:285 , ILE G:298 , GLU G:299 , THR G:376 , MN G:1074 , MN G:1075 , PO4 G:1078 , HOH G:1222 , HOH G:1237 , HOH G:1548 , HOH G:1549
BINDING SITE FOR RESIDUE ADP G 1089
83
JC2
SOFTWARE
ARG G:715 , HIS G:754 , PHE G:755 , LEU G:756 , GLU G:761 , ALA G:785 , GLY G:786 , VAL G:787 , HIS G:788 , SER G:789 , GLN G:829 , GLU G:841 , MN G:1079 , HOH G:1474 , HOH G:1478 , HOH G:1550 , HOH G:1551
BINDING SITE FOR RESIDUE ADP G 1090
84
JC3
SOFTWARE
GLU G:783 , ASP G:791 , GLU G:892 , LEU G:907 , TYR G:1040 , ASP G:1041 , THR G:1042 , HOH G:1488 , HOH G:1511 , HOH G:1554
BINDING SITE FOR RESIDUE ORN G 1091
85
JC4
SOFTWARE
GLN G:22 , THR G:94 , ASN G:97 , CL G:1082
BINDING SITE FOR RESIDUE NET G 1092
86
JC5
SOFTWARE
SER G:948 , VAL G:949 , LYS G:954 , THR G:974 , GLY G:976 , THR G:977 , LYS G:993 , ASN G:1015 , THR G:1016 , THR G:1017 , ALA G:1022 , ASP G:1025 , SER G:1026 , ILE G:1029 , HOH G:1537
BINDING SITE FOR RESIDUE U G 1093
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: CPSASE_1 (A:164-178,C:164-178,E:164-178,G:16...)
2: CPSASE_2 (A:297-304,C:297-304,E:297-304,G:29...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
CARB_ECOLI
164-178
710-724
8
A:164-178
C:164-178
E:164-178
G:164-178
A:710-724
C:710-724
E:710-724
G:710-724
2
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
CARB_ECOLI
297-304
839-846
8
A:297-304
C:297-304
E:297-304
G:297-304
A:839-846
C:839-846
E:839-846
G:839-846
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 32)
Info
All SCOP Domains
1a: SCOP_d1t36a1 (A:403-555)
1b: SCOP_d1t36c1 (C:403-555)
1c: SCOP_d1t36e1 (E:403-555)
1d: SCOP_d1t36g1 (G:403-555)
2a: SCOP_d1t36a5 (A:128-402)
2b: SCOP_d1t36a6 (A:677-935)
2c: SCOP_d1t36c5 (C:128-402)
2d: SCOP_d1t36c6 (C:677-935)
2e: SCOP_d1t36e5 (E:128-402)
2f: SCOP_d1t36e6 (E:677-935)
2g: SCOP_d1t36g5 (G:128-402)
2h: SCOP_d1t36g6 (G:677-935)
3a: SCOP_d1t36b2 (B:153-380)
3b: SCOP_d1t36d2 (D:153-380)
3c: SCOP_d1t36f2 (F:153-380)
3d: SCOP_d1t36h2 (H:153-380)
4a: SCOP_d1t36a2 (A:936-1073)
4b: SCOP_d1t36c2 (C:936-1073)
4c: SCOP_d1t36e2 (E:936-1073)
4d: SCOP_d1t36g2 (G:936-1073)
5a: SCOP_d1t36a3 (A:1-127)
5b: SCOP_d1t36a4 (A:556-676)
5c: SCOP_d1t36c3 (C:1-127)
5d: SCOP_d1t36c4 (C:556-676)
5e: SCOP_d1t36e3 (E:1-127)
5f: SCOP_d1t36e4 (E:556-676)
5g: SCOP_d1t36g3 (G:1-127)
5h: SCOP_d1t36g4 (G:556-676)
6a: SCOP_d1t36b1 (B:2-152)
6b: SCOP_d1t36d1 (D:2-152)
6c: SCOP_d1t36f1 (F:2-152)
6d: SCOP_d1t36h1 (H:2-152)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Superfamily
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Family
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Escherichia coli [TaxId: 562]
(10)
1a
d1t36a1
A:403-555
1b
d1t36c1
C:403-555
1c
d1t36e1
E:403-555
1d
d1t36g1
G:403-555
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
(10)
Escherichia coli [TaxId: 562]
(10)
2a
d1t36a5
A:128-402
2b
d1t36a6
A:677-935
2c
d1t36c5
C:128-402
2d
d1t36c6
C:677-935
2e
d1t36e5
E:128-402
2f
d1t36e6
E:677-935
2g
d1t36g5
G:128-402
2h
d1t36g6
G:677-935
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
Carbamoyl phosphate synthetase, small subunit C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
3a
d1t36b2
B:153-380
3b
d1t36d2
D:153-380
3c
d1t36f2
F:153-380
3d
d1t36h2
H:153-380
Fold
:
Methylglyoxal synthase-like
(31)
Superfamily
:
Methylglyoxal synthase-like
(31)
Family
:
Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
4a
d1t36a2
A:936-1073
4b
d1t36c2
C:936-1073
4c
d1t36e2
E:936-1073
4d
d1t36g2
G:936-1073
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
(10)
Escherichia coli [TaxId: 562]
(10)
5a
d1t36a3
A:1-127
5b
d1t36a4
A:556-676
5c
d1t36c3
C:1-127
5d
d1t36c4
C:556-676
5e
d1t36e3
E:1-127
5f
d1t36e4
E:556-676
5g
d1t36g3
G:1-127
5h
d1t36g4
G:556-676
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Family
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
6a
d1t36b1
B:2-152
6b
d1t36d1
D:2-152
6c
d1t36f1
F:2-152
6d
d1t36h1
H:2-152
[
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CATH Domains
(7, 38)
Info
all CATH domains
1a: CATH_1t36C06 (C:664-686,C:757-936)
1b: CATH_1t36E06 (E:664-686,E:757-936)
1c: CATH_1t36G06 (G:664-686,G:757-936)
1d: CATH_1t36A02 (A:117-140,A:211-403)
1e: CATH_1t36C02 (C:117-140,C:211-403)
1f: CATH_1t36E02 (E:117-140,E:211-403)
1g: CATH_1t36G02 (G:117-140,G:211-403)
2a: CATH_1t36A03 (A:141-210)
2b: CATH_1t36C03 (C:141-210)
2c: CATH_1t36E03 (E:141-210)
2d: CATH_1t36G03 (G:141-210)
2e: CATH_1t36C07 (C:687-756)
2f: CATH_1t36E07 (E:687-756)
2g: CATH_1t36G07 (G:687-756)
3a: CATH_1t36A07 (A:937-1073)
3b: CATH_1t36C08 (C:937-1073)
3c: CATH_1t36E08 (E:937-1073)
3d: CATH_1t36G08 (G:937-1073)
4a: CATH_1t36C05 (C:554-663)
4b: CATH_1t36E05 (E:554-663)
4c: CATH_1t36G05 (G:554-663)
4d: CATH_1t36A01 (A:1-116)
4e: CATH_1t36C01 (C:1-116)
4f: CATH_1t36E01 (E:1-116)
4g: CATH_1t36G01 (G:1-116)
4h: CATH_1t36A05 (A:523-665)
5a: CATH_1t36B02 (B:152-380)
5b: CATH_1t36D02 (D:152-380)
5c: CATH_1t36F02 (F:152-380)
5d: CATH_1t36H02 (H:152-380)
6a: CATH_1t36B01 (B:2-151)
6b: CATH_1t36F01 (F:2-151)
6c: CATH_1t36H01 (H:2-151)
6d: CATH_1t36D01 (D:2-151)
7a: CATH_1t36C04 (C:404-553)
7b: CATH_1t36G04 (G:404-553)
7c: CATH_1t36A04 (A:404-522)
7d: CATH_1t36E04 (E:404-553)
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(
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(
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Escherichia coli. Organism_taxid: 562.
(17)
1a
1t36C06
C:664-686,C:757-936
1b
1t36E06
E:664-686,E:757-936
1c
1t36G06
G:664-686,G:757-936
1d
1t36A02
A:117-140,A:211-403
1e
1t36C02
C:117-140,C:211-403
1f
1t36E02
E:117-140,E:211-403
1g
1t36G02
G:117-140,G:211-403
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Escherichia coli. Organism_taxid: 562.
(15)
2a
1t36A03
A:141-210
2b
1t36C03
C:141-210
2c
1t36E03
E:141-210
2d
1t36G03
G:141-210
2e
1t36C07
C:687-756
2f
1t36E07
E:687-756
2g
1t36G07
G:687-756
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1380, no name defined]
(29)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1t36A07
A:937-1073
3b
1t36C08
C:937-1073
3c
1t36E08
E:937-1073
3d
1t36G08
G:937-1073
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Escherichia coli. Organism_taxid: 562.
(10)
4a
1t36C05
C:554-663
4b
1t36E05
E:554-663
4c
1t36G05
G:554-663
4d
1t36A01
A:1-116
4e
1t36C01
C:1-116
4f
1t36E01
E:1-116
4g
1t36G01
G:1-116
4h
1t36A05
A:523-665
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Escherichia coli. Organism_taxid: 562.
(10)
5a
1t36B02
B:152-380
5b
1t36D02
D:152-380
5c
1t36F02
F:152-380
5d
1t36H02
H:152-380
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
[code=3.50.30.20, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(3)
6a
1t36B01
B:2-151
6b
1t36F01
F:2-151
6c
1t36H01
H:2-151
6d
1t36D01
D:2-151
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Carbamoyl Phosphate Synthetase; Chain A, domain 4
(10)
Homologous Superfamily
:
Carbamoyl Phosphate Synthetase; Chain A, domain 4
(10)
Escherichia coli. Organism_taxid: 562.
(3)
7a
1t36C04
C:404-553
7b
1t36G04
G:404-553
7c
1t36A04
A:404-522
7d
1t36E04
E:404-553
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Pfam Domains
(0, 0)
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