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1T2K
Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
STRUCTURE OF THE DNA BINDING DOMAINS OF IRF3, ATF-2 AND JUN BOUND TO DNA
Authors
:
D. Panne, T. Maniatis, S. C. Harrison
Date
:
21 Apr 04 (Deposition) - 16 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Protein Dna Complex, Transcription, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Panne, T. Maniatis, S. C. Harrison
Crystal Structure Of Atf-2/C-Jun And Irf-3 Bound To The Interferon-Beta Enhancer.
Embo J. V. 23 4384 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(3, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011901 (R96Q, chain A/B, )
2: VAR_049643 (Y107F, chain A/B, )
3: VAR_012070 (T297M, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011901
R
96
Q
IRF3_HUMAN
Polymorphism
968457
A/B
R
96
Q
2
UniProt
VAR_049643
Y
107
F
IRF3_HUMAN
Polymorphism
34745118
A/B
Y
107
F
3
UniProt
VAR_012070
T
297
M
JUN_HUMAN
Polymorphism
9989
C
T
297
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: IRF_2 (A:5-111,B:5-111)
2: IRF_1 (A:26-58,B:26-58)
3: BZIP_BASIC (C:257-272,D:339-354)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IRF_2
PS51507
IRF tryptophan pentad repeat DNA-binding domain profile.
IRF3_HUMAN
5-111
2
A:5-111
B:5-111
2
IRF_1
PS00601
IRF tryptophan pentad repeat DNA-binding domain signature.
IRF3_HUMAN
26-58
2
A:26-58
B:26-58
3
BZIP_BASIC
PS00036
Basic-leucine zipper (bZIP) domain signature.
JUN_HUMAN
257-272
1
C:257-272
ATF2_HUMAN
357-372
1
D:339-354
[
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]
Exons
(5, 7)
Info
All Exons
Exon 1.1 (C:253-314)
Exon 2.2 (A:3-55 | B:4-55)
Exon 2.3 (A:56-112 | B:56-111)
Exon 3.17a (D:336-377)
Exon 3.19a (D:378-396)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary 2.1a/2.2
4: Boundary 2.2/2.3
5: Boundary 2.3/2.4
6: Boundary 3.16/3.17a
7: Boundary 3.17a/3.19a
8: Boundary 3.19a/3.21c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000371222
1
ENSE00001454665
chr1:
59249785-59246465
3321
JUN_HUMAN
1-679
679
1
C:253-314
62
2.1a
ENST00000377139
1a
ENSE00001741588
chr19:
50169132-50168888
245
IRF3_HUMAN
-
0
0
-
-
2.2
ENST00000377139
2
ENSE00001192374
chr19:
50168103-50167931
173
IRF3_HUMAN
1-55
55
2
A:3-55
B:4-55
53
52
2.3
ENST00000377139
3
ENSE00000720991
chr19:
50166771-50166600
172
IRF3_HUMAN
56-113
58
2
A:56-112
B:56-111
57
56
2.4
ENST00000377139
4
ENSE00001762773
chr19:
50166515-50166445
71
IRF3_HUMAN
113-136
24
0
-
-
2.5
ENST00000377139
5
ENSE00001662781
chr19:
50165874-50165682
193
IRF3_HUMAN
137-201
65
0
-
-
2.6
ENST00000377139
6
ENSE00001759095
chr19:
50165585-50165205
381
IRF3_HUMAN
201-328
128
0
-
-
2.7b
ENST00000377139
7b
ENSE00001699705
chr19:
50164085-50163970
116
IRF3_HUMAN
328-366
39
0
-
-
2.8b
ENST00000377139
8b
ENSE00001707173
chr19:
50163090-50162829
262
IRF3_HUMAN
367-427
61
0
-
-
3.2c
ENST00000392544
2c
ENSE00001353077
chr2:
176032897-176032778
120
ATF2_HUMAN
-
0
0
-
-
3.3a
ENST00000392544
3a
ENSE00001353075
chr2:
176015886-176015788
99
ATF2_HUMAN
-
0
0
-
-
3.4
ENST00000392544
4
ENSE00001512338
chr2:
176012708-176012674
35
ATF2_HUMAN
-
0
0
-
-
3.5
ENST00000392544
5
ENSE00002185498
chr2:
176001214-176001140
75
ATF2_HUMAN
1-11
11
0
-
-
3.7a
ENST00000392544
7a
ENSE00001686910
chr2:
175994935-175994866
70
ATF2_HUMAN
11-34
24
0
-
-
3.10
ENST00000392544
10
ENSE00000782508
chr2:
175986268-175986172
97
ATF2_HUMAN
35-67
33
0
-
-
3.11
ENST00000392544
11
ENSE00001643747
chr2:
175983097-175982979
119
ATF2_HUMAN
67-106
40
0
-
-
3.12
ENST00000392544
12
ENSE00001593218
chr2:
175982846-175982718
129
ATF2_HUMAN
107-149
43
0
-
-
3.13b
ENST00000392544
13b
ENSE00001684920
chr2:
175979596-175979418
179
ATF2_HUMAN
150-209
60
0
-
-
3.14
ENST00000392544
14
ENSE00002163944
chr2:
175978836-175978722
115
ATF2_HUMAN
209-247
39
0
-
-
3.15
ENST00000392544
15
ENSE00001616841
chr2:
175976382-175976296
87
ATF2_HUMAN
248-276
29
0
-
-
3.16
ENST00000392544
16
ENSE00001728120
chr2:
175962321-175962172
150
ATF2_HUMAN
277-326
50
0
-
-
3.17a
ENST00000392544
17a
ENSE00001664890
chr2:
175957995-175957789
207
ATF2_HUMAN
327-395
69
1
D:336-377
42
3.19a
ENST00000392544
19a
ENSE00001722092
chr2:
175945493-175945388
106
ATF2_HUMAN
396-431
36
1
D:378-396
19
3.21c
ENST00000392544
21c
ENSE00001781866
chr2:
175939563-175939233
331
ATF2_HUMAN
431-505
75
0
-
-
[
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]
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1t2ka_ (A:)
1b: SCOP_d1t2kb_ (B:)
2a: SCOP_d1t2kc_ (C:)
3a: SCOP_d1t2kd_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Interferon regulatory factor
(8)
Protein domain
:
Interferon regulatory factor 3, IRF-3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1t2ka_
A:
1b
d1t2kb_
B:
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Leucine zipper domain
(105)
Family
:
Leucine zipper domain
(105)
Protein domain
:
C-jun
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1t2kc_
C:
Protein domain
:
Cyclic-AMP-dependent transcription factor ATF-2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1t2kd_
D:
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1t2kA01 (A:7-110)
1b: CATH_1t2kB01 (B:7-110)
2a: CATH_1t2kC00 (C:253-314)
2b: CATH_1t2kD00 (D:336-396)
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
1a
1t2kA01
A:7-110
1b
1t2kB01
B:7-110
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
[unclassified]
(20)
2a
1t2kC00
C:253-314
2b
1t2kD00
D:336-396
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_bZIP_1_1t2kD01 (D:336-395)
1b: PFAM_bZIP_1_1t2kC01 (C:254-313)
2a: PFAM_IRF_1t2kB01 (B:5-111)
2b: PFAM_IRF_1t2kB02 (B:5-111)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
bZIP
(54)
Family
:
bZIP_1
(51)
Homo sapiens (Human)
(5)
1a
bZIP_1-1t2kD01
D:336-395
1b
bZIP_1-1t2kC01
C:254-313
Clan
:
no clan defined [family: IRF]
(4)
Family
:
IRF
(4)
Homo sapiens (Human)
(3)
2a
IRF-1t2kB01
B:5-111
2b
IRF-1t2kB02
B:5-111
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Asym.Unit (87 KB)
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