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1SZZ
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM LEPTOSPIRA INTERROGANS COMPLEXED WITH INHIBITOR ACTINONIN
Authors
:
Z. Zhou, X. Song, Y. Li, W. Gong
Date
:
06 Apr 04 (Deposition) - 16 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: D,H (1x)
Biol. Unit 4: F,G (1x)
Keywords
:
Half-Open Conformation, Bb2 Complexed, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhou, X. Song, W. Gong
Novel Conformational States Of Peptide Deformylase From Pathogenic Bacterium Leptospira Interrogans: Implications For Population Shift
J. Biol. Chem. V. 280 42391 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: ACTINONIN (BB2a)
1b: ACTINONIN (BB2b)
1c: ACTINONIN (BB2c)
1d: ACTINONIN (BB2d)
1e: ACTINONIN (BB2e)
1f: ACTINONIN (BB2f)
1g: ACTINONIN (BB2g)
1h: ACTINONIN (BB2h)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BB2
8
Ligand/Ion
ACTINONIN
2
ZN
8
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:53 , CYS A:101 , HIS A:143 , HIS A:147 , BB2 A:513
BINDING SITE FOR RESIDUE ZN A 716
02
AC2
SOFTWARE
GLN B:53 , CYS B:101 , HIS B:143 , HIS B:147 , BB2 B:514
BINDING SITE FOR RESIDUE ZN B 717
03
AC3
SOFTWARE
GLN C:53 , CYS C:101 , HIS C:143 , HIS C:147 , BB2 C:515
BINDING SITE FOR RESIDUE ZN C 718
04
AC4
SOFTWARE
GLN D:53 , CYS D:101 , HIS D:143 , HIS D:147 , BB2 D:516
BINDING SITE FOR RESIDUE ZN D 719
05
AC5
SOFTWARE
GLN E:53 , CYS E:101 , HIS E:143 , HIS E:147 , BB2 E:517
BINDING SITE FOR RESIDUE ZN E 720
06
AC6
SOFTWARE
GLN F:53 , CYS F:101 , HIS F:143 , HIS F:147 , BB2 F:518
BINDING SITE FOR RESIDUE ZN F 721
07
AC7
SOFTWARE
GLN G:53 , CYS G:101 , HIS G:143 , HIS G:147 , BB2 G:519
BINDING SITE FOR RESIDUE ZN G 722
08
AC8
SOFTWARE
GLN H:53 , CYS H:101 , HIS H:143 , HIS H:147 , BB2 H:520
BINDING SITE FOR RESIDUE ZN H 723
09
AC9
SOFTWARE
GLY A:46 , VAL A:47 , GLY A:48 , GLN A:53 , TRP A:98 , GLY A:100 , CYS A:101 , LEU A:102 , TYR A:136 , ILE A:139 , VAL A:140 , HIS A:143 , GLU A:144 , HIS A:147 , ZN A:716
BINDING SITE FOR RESIDUE BB2 A 513
10
BC1
SOFTWARE
GLY B:46 , VAL B:47 , GLY B:48 , GLN B:53 , TYR B:71 , PHE B:97 , TRP B:98 , GLY B:100 , CYS B:101 , LEU B:102 , TYR B:136 , ILE B:139 , VAL B:140 , HIS B:143 , GLU B:144 , HIS B:147 , ZN B:717
BINDING SITE FOR RESIDUE BB2 B 514
11
BC2
SOFTWARE
GLY C:46 , VAL C:47 , GLY C:48 , GLN C:53 , TYR C:71 , TRP C:98 , GLU C:99 , GLY C:100 , CYS C:101 , LEU C:102 , TYR C:136 , ILE C:139 , HIS C:143 , GLU C:144 , HIS C:147 , ZN C:718
BINDING SITE FOR RESIDUE BB2 C 515
12
BC3
SOFTWARE
GLY D:46 , VAL D:47 , GLY D:48 , GLN D:53 , GLU D:69 , THR D:74 , TRP D:98 , GLU D:99 , GLY D:100 , CYS D:101 , LEU D:102 , TYR D:136 , VAL D:140 , HIS D:143 , GLU D:144 , HIS D:147 , ZN D:719
BINDING SITE FOR RESIDUE BB2 D 516
13
BC4
SOFTWARE
GLY E:46 , VAL E:47 , GLY E:48 , GLN E:53 , TRP E:98 , GLU E:99 , GLY E:100 , CYS E:101 , LEU E:102 , ILE E:139 , HIS E:143 , GLU E:144 , HIS E:147 , ZN E:720
BINDING SITE FOR RESIDUE BB2 E 517
14
BC5
SOFTWARE
GLY F:46 , VAL F:47 , GLY F:48 , GLN F:53 , TRP F:98 , GLY F:100 , CYS F:101 , LEU F:102 , TYR F:136 , HIS F:143 , GLU F:144 , HIS F:147 , ZN F:721
BINDING SITE FOR RESIDUE BB2 F 518
15
BC6
SOFTWARE
VAL G:47 , GLY G:48 , GLN G:53 , PHE G:97 , TRP G:98 , GLU G:99 , GLY G:100 , CYS G:101 , LEU G:102 , ILE G:139 , VAL G:140 , HIS G:143 , GLU G:144 , HIS G:147 , ZN G:722
BINDING SITE FOR RESIDUE BB2 G 519
16
BC7
SOFTWARE
GLY H:46 , VAL H:47 , GLY H:48 , GLN H:53 , TRP H:98 , GLY H:100 , CYS H:101 , LEU H:102 , ARG H:108 , TYR H:136 , VAL H:140 , HIS H:143 , GLU H:144 , HIS H:147 , ZN H:723
BINDING SITE FOR RESIDUE BB2 H 520
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(0, 0)
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1szzA00 (A:1-171)
1b: CATH_1szzB00 (B:1-171)
1c: CATH_1szzC00 (C:1-171)
1d: CATH_1szzD00 (D:1-171)
1e: CATH_1szzE00 (E:1-171)
1f: CATH_1szzF00 (F:1-171)
1g: CATH_1szzG00 (G:1-171)
1h: CATH_1szzH00 (H:1-171)
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(
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Peptide Deformylase
(68)
Homologous Superfamily
:
Peptide Deformylase
(68)
Leptospira interrogans. Organism_taxid: 173.
(2)
1a
1szzA00
A:1-171
1b
1szzB00
B:1-171
1c
1szzC00
C:1-171
1d
1szzD00
D:1-171
1e
1szzE00
E:1-171
1f
1szzF00
F:1-171
1g
1szzG00
G:1-171
1h
1szzH00
H:1-171
[
close CATH info
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Pep_deformylase_1szzH01 (H:2-163)
1b: PFAM_Pep_deformylase_1szzH02 (H:2-163)
1c: PFAM_Pep_deformylase_1szzH03 (H:2-163)
1d: PFAM_Pep_deformylase_1szzH04 (H:2-163)
1e: PFAM_Pep_deformylase_1szzH05 (H:2-163)
1f: PFAM_Pep_deformylase_1szzH06 (H:2-163)
1g: PFAM_Pep_deformylase_1szzH07 (H:2-163)
1h: PFAM_Pep_deformylase_1szzH08 (H:2-163)
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(
)
Clan
:
no clan defined [family: Pep_deformylase]
(48)
Family
:
Pep_deformylase
(48)
Leptospira interrogans
(5)
1a
Pep_deformylase-1szzH01
H:2-163
1b
Pep_deformylase-1szzH02
H:2-163
1c
Pep_deformylase-1szzH03
H:2-163
1d
Pep_deformylase-1szzH04
H:2-163
1e
Pep_deformylase-1szzH05
H:2-163
1f
Pep_deformylase-1szzH06
H:2-163
1g
Pep_deformylase-1szzH07
H:2-163
1h
Pep_deformylase-1szzH08
H:2-163
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Asym.Unit (228 KB)
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