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1SX9
Theor. Model
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(1)
Title
:
STRUCTURAL MODEL OF THE WILDTYPE HUMAN SOX9-DNA COMPLEX
Authors
:
S. Ranganathan, S. Mcdowall, A. Argentaro, P. Weller, S. Mertin, S. Mansour, J. Tolmie, V. Harley
Date
:
14 May 99 (Deposition) - 20 May 99 (Release) - 01 Apr 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C
Keywords
:
Complex (Dna-Binding Protein/Dna)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Mcdowall, A. Argentaro, S. Ranganathan, P. Weller, S. Mertin, S. Mansour, J. Tolmie, V. Harley
Functional And Structural Studies Of Wild Type Sox9 And Mutations Causing Campomelic Dysplasia.
J. Biol. Chem. V. 274 24023 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(15, 15)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003735 (P8L, chain A, )
02: VAR_003736 (F12L, chain A, )
03: VAR_003737 (F12S, chain A, )
04: VAR_063643 (M13T, chain A, )
05: VAR_063644 (M13V, chain A, )
06: VAR_003738 (A19V, chain A, )
07: VAR_003739 (W43R, chain A, )
08: VAR_003740 (R52P, chain A, )
09: VAR_008529 (F54L, chain A, )
10: VAR_008530 (A58T, chain A, )
11: VAR_063645 (H65Q, chain A, )
12: VAR_008531 (H65Y, chain A, )
13: VAR_063646 (P70L, chain A, )
14: VAR_003741 (P70R, chain A, )
15: VAR_063647 (K73E, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003735
P
108
L
SOX9_HUMAN
Disease (CMD1)
---
A
P
8
L
02
UniProt
VAR_003736
F
112
L
SOX9_HUMAN
Disease (CMD1)
---
A
F
12
L
03
UniProt
VAR_003737
F
112
S
SOX9_HUMAN
Disease (CMD1)
---
A
F
12
S
04
UniProt
VAR_063643
M
113
T
SOX9_HUMAN
Disease (CMD1)
---
A
M
13
T
05
UniProt
VAR_063644
M
113
V
SOX9_HUMAN
Disease (CMD1)
---
A
M
13
V
06
UniProt
VAR_003738
A
119
V
SOX9_HUMAN
Disease (CMD1)
---
A
A
19
V
07
UniProt
VAR_003739
W
143
R
SOX9_HUMAN
Disease (CMD1)
---
A
W
43
R
08
UniProt
VAR_003740
R
152
P
SOX9_HUMAN
Disease (CMD1)
---
A
R
52
P
09
UniProt
VAR_008529
F
154
L
SOX9_HUMAN
Disease (CMD1)
---
A
F
54
L
10
UniProt
VAR_008530
A
158
T
SOX9_HUMAN
Disease (CMD1)
---
A
A
58
T
11
UniProt
VAR_063645
H
165
Q
SOX9_HUMAN
Disease (CMD1)
---
A
H
65
Q
12
UniProt
VAR_008531
H
165
Y
SOX9_HUMAN
Disease (CMD1)
28940282
A
H
65
Y
13
UniProt
VAR_063646
P
170
L
SOX9_HUMAN
Disease (CMD1)
---
A
P
70
L
14
UniProt
VAR_003741
P
170
R
SOX9_HUMAN
Disease (CMD1)
---
A
P
70
R
15
UniProt
VAR_063647
K
173
E
SOX9_HUMAN
Disease (CMD1)
---
A
K
73
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HMG_BOX_2 (A:5-73)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HMG_BOX_2
PS50118
HMG boxes A and B DNA-binding domains profile.
SOX9_HUMAN
105-173
1
A:5-73
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (A:1-44)
Exon 1.2 (A:44-77)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000245479
1
ENSE00000855029
chr17:
70117161-70117963
803
SOX9_HUMAN
1-144
144
1
A:1-44
44
1.2
ENST00000245479
2
ENSE00000855030
chr17:
70118860-70119113
254
SOX9_HUMAN
144-229
86
1
A:44-77
34
1.3b
ENST00000245479
3b
ENSE00001012847
chr17:
70119684-70122561
2878
SOX9_HUMAN
229-509
281
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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