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1SLA
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
X-RAY CRYSTALLOGRAPHY REVEALS CROSSLINKING OF MAMMALIAN LECTIN (GALECTIN-1) BY BIANTENNARY COMPLEX TYPE SACCHARIDES
Authors
:
Y. Bourne, C. Cambillau
Date
:
12 Mar 94 (Deposition) - 26 Jan 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Complex(Lectin-Saccharide), Complex(Lectin-Saccharide) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, B. Bolgiano, D. I. Liao, G. Strecker, P. Cantau, O. Herzberg T. Feizi, C. Cambillau
Crosslinking Of Mammalian Lectin (Galectin-1) By Complex Biantennary Saccharides.
Nat. Struct. Biol. V. 1 863 1994
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: G1C (UNKNOWN)
10: GA1 (UNKNOWN)
11: GA2 (UNKNOWN)
12: GC2 (UNKNOWN)
13: MN1 (UNKNOWN)
14: MN2 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:48 , HIS A:52 , GLU A:71 , ARG A:73 , GAL A:402 , MAN A:403
BINDING SITE FOR RESIDUE NAG A 401
02
AC2
SOFTWARE
HIS A:44 , ASN A:46 , ARG A:48 , HIS A:52 , ASN A:61 , GLU A:71 , NAG A:401 , HOH A:429 , HOH A:481 , HOH A:484
BINDING SITE FOR RESIDUE GAL A 402
03
AC3
SOFTWARE
NAG A:401 , BMA A:404
BINDING SITE FOR RESIDUE MAN A 403
04
AC4
SOFTWARE
MAN A:403 , NAG A:405 , MAN A:413
BINDING SITE FOR RESIDUE BMA A 404
05
AC5
SOFTWARE
ALA A:65 , ALA A:67 , BMA A:404 , HOH A:493 , ALA B:51 , HIS B:52 , GLY B:53
BINDING SITE FOR RESIDUE NAG A 405
06
AC6
SOFTWARE
BMA A:404 , NAG A:411 , HOH B:168
BINDING SITE FOR RESIDUE MAN A 413
07
AC7
SOFTWARE
GAL A:412 , MAN A:413 , HOH A:455 , ARG B:48 , GLU B:71 , ARG B:73 , HOH B:166
BINDING SITE FOR RESIDUE NAG A 411
08
AC8
SOFTWARE
ASN A:39 , NAG A:411 , HOH A:424 , HIS B:44 , ASN B:46 , ARG B:48 , HIS B:52 , ASN B:61 , GLU B:71 , HOH B:141
BINDING SITE FOR RESIDUE GAL A 412
09
G1C
UNKNOWN
ARG A:48 , GLU A:71 , ARG A:73
NULL
10
GA1
UNKNOWN
HIS A:44 , ASN A:46 , ARG A:48 , TRP A:68 , ASN A:61 , GLU A:71
NULL
11
GA2
UNKNOWN
HIS B:44 , ASN B:46 , ARG B:48 , TRP B:68 , ASN B:61 , GLU B:71
NULL
12
GC2
UNKNOWN
ARG B:48 , GLU B:71 , ARG B:73
NULL
13
MN1
UNKNOWN
GLY A:53
NULL
14
MN2
UNKNOWN
GLY B:53
NULL
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:3-134,B:3-134)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG1_BOVIN
4-135
2
A:3-134
B:3-134
[
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Exons
(2, 4)
Info
All Exons
Exon 1.1 (A:1-57 | B:1-57)
Exon 1.2 (A:58-105 | B:58-105)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000020080
1
ENSBTAE00000163579
chr5:
116534343-116535003
661
LEG1_BOVIN
1-58
58
2
A:1-57
B:1-57
57
57
1.2
ENSBTAT00000020080
2
ENSBTAE00000163587
chr5:
116535341-116535537
197
LEG1_BOVIN
59-106
48
2
A:58-105
B:58-105
48
48
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1slaa_ (A:)
1b: SCOP_d1slab_ (B:)
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Classes
(
)
(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Galectin (animal S-lectin)
(75)
Protein domain
:
Galectin-1
(22)
Cow (Bos taurus) [TaxId: 9913]
(4)
1a
d1slaa_
A:
1b
d1slab_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1slaA00 (A:1-134)
1b: CATH_1slaB00 (B:1-134)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Cow (Bos taurus)
(4)
1a
1slaA00
A:1-134
1b
1slaB00
B:1-134
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_1slaB01 (B:3-133)
1b: PFAM_Gal_bind_lectin_1slaB02 (B:3-133)
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)
Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Bos taurus (Bovine)
(3)
1a
Gal-bind_lectin-1slaB01
B:3-133
1b
Gal-bind_lectin-1slaB02
B:3-133
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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