PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1SBX
Asym. Unit
Info
Asym.Unit (24 KB)
Biol.Unit 1 (20 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE DACHSHUND-HOMOLOGY DOMAIN OF HUMAN SKI
Authors
:
J. J. Wilson, M. Malakhova, R. Zhang, A. Joachimiak, R. S. Hegde
Date
:
11 Feb 04 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Winged Helix, Forkhead, Oncoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Wilson, M. Malakhova, R. Zhang, A. Joachimiak, R. S. Hegde
Crystal Structure Of The Dachshund Homology Domain Of Human Ski
Structure V. 12 785 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
3
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071182 (G116E, chain A, )
2: VAR_071183 (G117R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071182
G
116
E
SKI_HUMAN
Disease (SGS)
---
A
G
116
E
2
UniProt
VAR_071183
G
117
R
SKI_HUMAN
Disease (SGS)
---
A
G
117
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:87-192)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000378536
1
ENSE00001477855
chr1:
2160134-2161174
1041
SKI_HUMAN
1-323
323
1
A:87-192
106
1.4b
ENST00000378536
4b
ENSE00001035938
chr1:
2234417-2234542
126
SKI_HUMAN
324-365
42
0
-
-
1.5b
ENST00000378536
5b
ENSE00001035943
chr1:
2234724-2234839
116
SKI_HUMAN
366-404
39
0
-
-
1.6b
ENST00000378536
6b
ENSE00001035948
chr1:
2235279-2235541
263
SKI_HUMAN
404-492
89
0
-
-
1.7b
ENST00000378536
7b
ENSE00001035949
chr1:
2235732-2236024
293
SKI_HUMAN
492-589
98
0
-
-
1.8
ENST00000378536
8
ENSE00001035950
chr1:
2237459-2237689
231
SKI_HUMAN
590-666
77
0
-
-
1.9
ENST00000378536
9
ENSE00001477851
chr1:
2238016-2241558
3543
SKI_HUMAN
667-728
62
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1sbxa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Putative DNA-binding domain
(45)
Superfamily
:
Putative DNA-binding domain
(45)
Family
:
Dachshund-homology domain
(3)
Protein domain
:
Ski oncogene
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1sbxa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1sbxA00 (A:87-192)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mlu1-box Binding Protein; DNA-binding Domain
(6)
Homologous Superfamily
:
Putative DNA-binding domain
(3)
Human (Homo sapiens)
(3)
1a
1sbxA00
A:87-192
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ski_Sno_1sbxA01 (A:91-192)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Ski_Sno]
(2)
Family
:
Ski_Sno
(2)
Homo sapiens (Human)
(2)
1a
Ski_Sno-1sbxA01
A:91-192
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (24 KB)
Header - Asym.Unit
Biol.Unit 1 (20 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1SBX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
