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1S5O
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
STRUCTURAL AND MUTATIONAL CHARACTERIZATION OF L-CARNITINE BINDING TO HUMAN CARNITINE ACETYLTRANSFERASE
Authors
:
L. Govindasamy, T. Kukar, W. Lian, B. Pedersen, Y. Gu, M. Agbandje- Mckenna, S. Jin, R. Mckenna, D. Wu
Date
:
21 Jan 04 (Deposition) - 03 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Carnitine Acetyltransferase, Binary Complex, X-Ray Structure, Steady-State Enzyme Kinetics, Substrate Binding Site
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Govindasamy, T. Kukar, W. Lian, B. Pedersen, Y. Gu, M. Agbandje-Mckenna, S. Jin, R. Mckenna, D. Wu
Structural And Mutational Characterization Of L-Carnitine Binding To Human Carnitine Acetyltransferase.
J. Struct. Biol. V. 146 416 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CARNITINE (152a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
152
1
Ligand/Ion
CARNITINE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:81 , HIS A:322 , GLU A:326 , TYR A:431 , SER A:433 , THR A:444 , SER A:531 , PHE A:545 , HOH A:638
BINDING SITE FOR RESIDUE 152 A 617
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047780 (M351M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047780
L
372
M
CACP_HUMAN
Polymorphism
3118635
A
M
351
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ACYLTRANSF_C_1 (A:14-29)
2: ACYLTRANSF_C_2 (A:300-327)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYLTRANSF_C_1
PS00439
Acyltransferases ChoActase / COT / CPT family signature 1.
CACP_HUMAN
35-50
1
A:14-29
2
ACYLTRANSF_C_2
PS00440
Acyltransferases ChoActase / COT / CPT family signature 2.
CACP_HUMAN
321-348
1
A:300-327
[
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Exons
(13, 13)
Info
All Exons
Exon 1.6c (A:9-76)
Exon 1.7b (A:77-116)
Exon 1.8 (A:116-134)
Exon 1.9b (A:134-189)
Exon 1.10b (A:190-248)
Exon 1.11b (A:248-307)
Exon 1.12 (A:308-341)
Exon 1.13 (A:341-381)
Exon 1.14 (A:381-422)
Exon 1.15a (A:422-467)
Exon 1.16 (A:468-488)
Exon 1.17c (A:489-534)
Exon 1.18d (A:535-599)
View:
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All Exon Boundaries
01: Boundary 1.2a/1.6c
02: Boundary 1.6c/1.7b
03: Boundary 1.7b/1.8
04: Boundary 1.8/1.9b
05: Boundary 1.9b/1.10b
06: Boundary 1.10b/1.11b
07: Boundary 1.11b/1.12
08: Boundary 1.12/1.13
09: Boundary 1.13/1.14
10: Boundary 1.14/1.15a
11: Boundary 1.15a/1.16
12: Boundary 1.16/1.17c
13: Boundary 1.17c/1.18d
14: Boundary 1.18d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000318080
2a
ENSE00002198585
chr9:
131873083-131872762
322
CACP_HUMAN
1-9
9
0
-
-
1.6c
ENST00000318080
6c
ENSE00001643423
chr9:
131870356-131870093
264
CACP_HUMAN
10-97
88
1
A:9-76
68
1.7b
ENST00000318080
7b
ENSE00001742690
chr9:
131866585-131866467
119
CACP_HUMAN
98-137
40
1
A:77-116
40
1.8
ENST00000318080
8
ENSE00001673785
chr9:
131865345-131865292
54
CACP_HUMAN
137-155
19
1
A:116-134
19
1.9b
ENST00000318080
9b
ENSE00001752446
chr9:
131864844-131864679
166
CACP_HUMAN
155-210
56
1
A:134-189
56
1.10b
ENST00000318080
10b
ENSE00001739720
chr9:
131864336-131864162
175
CACP_HUMAN
211-269
59
1
A:190-248
59
1.11b
ENST00000318080
11b
ENSE00001626328
chr9:
131862968-131862790
179
CACP_HUMAN
269-328
60
1
A:248-307
60
1.12
ENST00000318080
12
ENSE00001715827
chr9:
131862245-131862145
101
CACP_HUMAN
329-362
34
1
A:308-341
34
1.13
ENST00000318080
13
ENSE00001796247
chr9:
131860929-131860810
120
CACP_HUMAN
362-402
41
1
A:341-381
41
1.14
ENST00000318080
14
ENSE00001603258
chr9:
131860650-131860528
123
CACP_HUMAN
402-443
42
1
A:381-422
42
1.15a
ENST00000318080
15a
ENSE00001716530
chr9:
131860427-131860292
136
CACP_HUMAN
443-488
46
1
A:422-467
46
1.16
ENST00000318080
16
ENSE00001754439
chr9:
131859591-131859529
63
CACP_HUMAN
489-509
21
1
A:468-488
21
1.17c
ENST00000318080
17c
ENSE00001720684
chr9:
131858414-131858277
138
CACP_HUMAN
510-555
46
1
A:489-534
46
1.18d
ENST00000318080
18d
ENSE00001821873
chr9:
131857891-131857089
803
CACP_HUMAN
556-626
71
1
A:535-599
65
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s5oa1 (A:9-385)
1b: SCOP_d1s5oa2 (A:386-599)
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
CoA-dependent acyltransferases
(53)
Superfamily
:
CoA-dependent acyltransferases
(53)
Family
:
Choline/Carnitine O-acyltransferase
(21)
Protein domain
:
Carnitine acetyltransferase
(11)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1s5oa1
A:9-385
1b
d1s5oa2
A:386-599
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Chain A
Asymmetric Unit 1
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