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1RZ4
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN EIF3K
Authors
:
Z. Wei, P. Zhang, Z. Zhou, W. Gong
Date
:
23 Dec 03 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Heat Analogous Motif, Winged-Helix, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Wei, P. Zhang, Z. Zhou, Z. Cheng, M. Wan, W. Gong
Crystal Structure Of Human Eif3K, The First Structure Of Eif3 Subunits
J. Biol. Chem. V. 279 34983 2004
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:97 , GLN A:101 , ILE A:131 , THR A:132 , GLY A:133 , HOH A:1037 , HOH A:1109
BINDING SITE FOR RESIDUE SO4 A 1001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (A:2-20)
Exon 1.2 (A:20-53)
Exon 1.3 (A:53-93)
Exon 1.4 (A:94-118)
Exon 1.5 (A:119-141)
Exon 1.6 (A:141-167)
Exon 1.7 (A:167-209 (gaps))
Exon 1.8 (A:209-216)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000248342
1
ENSE00001235237
chr19:
39109722-39109967
246
EIF3K_HUMAN
1-20
20
1
A:2-20
19
1.2
ENST00000248342
2
ENSE00000951788
chr19:
39110977-39111075
99
EIF3K_HUMAN
20-53
34
1
A:20-53
34
1.3
ENST00000248342
3
ENSE00000951789
chr19:
39114717-39114837
121
EIF3K_HUMAN
53-93
41
1
A:53-93
41
1.4
ENST00000248342
4
ENSE00000951791
chr19:
39116668-39116742
75
EIF3K_HUMAN
94-118
25
1
A:94-118
25
1.5
ENST00000248342
5
ENSE00000951793
chr19:
39123070-39123136
67
EIF3K_HUMAN
119-141
23
1
A:119-141
23
1.6
ENST00000248342
6
ENSE00000875473
chr19:
39123241-39123318
78
EIF3K_HUMAN
141-167
27
1
A:141-167
27
1.7
ENST00000248342
7
ENSE00000951794
chr19:
39125633-39125758
126
EIF3K_HUMAN
167-209
43
1
A:167-209 (gaps)
43
1.8
ENST00000248342
8
ENSE00001235229
chr19:
39127529-39127595
67
EIF3K_HUMAN
209-218
10
1
A:209-216
8
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1rz4a2 (A:2-131)
2a: SCOP_d1rz4a1 (A:132-216)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
(1)
Protein domain
:
Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1rz4a2
A:2-131
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
(1)
Protein domain
:
Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1rz4a1
A:132-216
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1rz4A01 (A:2-121)
2a: CATH_1rz4A02 (A:123-216)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
ARM repeat; domain 1
(1)
Human (Homo sapiens)
(1)
1a
1rz4A01
A:2-121
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Human (Homo sapiens)
(70)
2a
1rz4A02
A:123-216
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PCI_Csn8_1rz4A01 (A:60-200)
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Clan
:
HTH
(544)
Family
:
PCI_Csn8
(1)
Homo sapiens (Human)
(1)
1a
PCI_Csn8-1rz4A01
A:60-200
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Chain A
Asymmetric Unit 1
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Asym.Unit (43 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
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