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1RYU
Asym. Unit
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Asym.Unit (291 KB)
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Models
(8 )
Title
:
SOLUTION STRUCTURE OF THE SWI1 ARID
Authors
:
S. Kim, Z. Zhang, S. Upchurch, N. Isern, Y. Chen
Date
:
22 Dec 03 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (8 x)
Keywords
:
Arid, Swi1, Nmr, Structural Genomics, Protein-Dna Interaction, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kim, Z. Zhang, S. Upchurch, N. Isern, Y. Chen
Structure And Dna-Binding Sites Of The Swi1 At-Rich Interaction Domain (Arid) Suggest Determinants For Sequence-Specific Dna Recognition.
J. Biol. Chem. V. 279 16670 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_064695 (R21K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064695
R
1020
K
ARI1A_HUMAN
Unclassified
---
A
R
21
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARID (A:18-109)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARID
PS51011
ARID domain profile.
ARI1A_HUMAN
1017-1108
1
A:18-109
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Exons
(2, 2)
Info
All Exons
Exon 1.11a (A:1-67)
Exon 1.12a (A:68-120)
View:
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All Exon Boundaries
1: Boundary 1.10c/1.11a
2: Boundary 1.11a/1.12a
3: Boundary 1.12a/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000324856
1a
ENSE00001907429
chr1:
27022524-27024031
1508
ARI1A_HUMAN
1-379
379
0
-
-
1.3b
ENST00000324856
3b
ENSE00001349776
chr1:
27056142-27056354
213
ARI1A_HUMAN
380-450
71
0
-
-
1.4b
ENST00000324856
4b
ENSE00000902180
chr1:
27057643-27058095
453
ARI1A_HUMAN
451-601
151
0
-
-
1.5
ENST00000324856
5
ENSE00001227857
chr1:
27059167-27059283
117
ARI1A_HUMAN
602-640
39
0
-
-
1.6
ENST00000324856
6
ENSE00001349762
chr1:
27087347-27087587
241
ARI1A_HUMAN
641-721
81
0
-
-
1.7
ENST00000324856
7
ENSE00001349761
chr1:
27087875-27087964
90
ARI1A_HUMAN
721-751
31
0
-
-
1.8
ENST00000324856
8
ENSE00001349760
chr1:
27088643-27088810
168
ARI1A_HUMAN
751-807
57
0
-
-
1.9
ENST00000324856
9
ENSE00001157462
chr1:
27089464-27089776
313
ARI1A_HUMAN
807-911
105
0
-
-
1.10a
ENST00000324856
10a
ENSE00000761096
chr1:
27092712-27092857
146
ARI1A_HUMAN
911-960
50
0
-
-
1.10c
ENST00000324856
10c
ENSE00001349753
chr1:
27092948-27093057
110
ARI1A_HUMAN
960-996
37
0
-
-
1.11a
ENST00000324856
11a
ENSE00001349752
chr1:
27094281-27094490
210
ARI1A_HUMAN
997-1066
70
1
A:1-67
67
1.12a
ENST00000324856
12a
ENSE00000872621
chr1:
27097610-27097817
208
ARI1A_HUMAN
1067-1136
70
1
A:68-120
53
1.13
ENST00000324856
13
ENSE00001227772
chr1:
27098991-27099123
133
ARI1A_HUMAN
1136-1180
45
0
-
-
1.14a
ENST00000324856
14a
ENSE00001227767
chr1:
27099303-27099478
176
ARI1A_HUMAN
1180-1239
60
0
-
-
1.15
ENST00000324856
15
ENSE00001227760
chr1:
27099837-27099987
151
ARI1A_HUMAN
1239-1289
51
0
-
-
1.16
ENST00000324856
16
ENSE00000761089
chr1:
27100071-27100208
138
ARI1A_HUMAN
1289-1335
47
0
-
-
1.17
ENST00000324856
17
ENSE00001349740
chr1:
27100293-27100389
97
ARI1A_HUMAN
1335-1367
33
0
-
-
1.18a
ENST00000324856
18a
ENSE00001349739
chr1:
27100820-27101711
892
ARI1A_HUMAN
1368-1665
298
0
-
-
1.19
ENST00000324856
19
ENSE00000872637
chr1:
27102068-27102198
131
ARI1A_HUMAN
1665-1708
44
0
-
-
1.21f
ENST00000324856
21f
ENSE00001883917
chr1:
27105514-27108595
3082
ARI1A_HUMAN
1709-2285
577
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ryua_ (A:)
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)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
ARID-like
(14)
Family
:
ARID domain
(12)
Protein domain
:
SWI-SNF complex protein p270, SMARCF1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ryua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ryuA00 (A:1-120)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.60, no name defined]
(11)
Human (Homo sapiens)
(7)
1a
1ryuA00
A:1-120
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ARID_1ryuA01 (A:16-105)
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Clans
(
)
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(
)
(
)
Clan
:
no clan defined [family: ARID]
(8)
Family
:
ARID
(8)
Homo sapiens (Human)
(4)
1a
ARID-1ryuA01
A:16-105
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Chain A
Asymmetric Unit 1
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Asym.Unit (291 KB)
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