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1RY1
Asym. Unit
Info
Asym.Unit (236 KB)
Biol.Unit 1 (229 KB)
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(1)
Title
:
STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME
Authors
:
M. Halic, T. Becker, M. R. Pool, C. M. Spahn, R. A. Grassucci, J. Frank, R. Beckmann
Date
:
19 Dec 03 (Deposition) - 20 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
12.00
Chains
:
Asym. Unit : A,B,C,D,E,M,N,O,P,Q,R,S,U,W
Biol. Unit 1: A,B,C,D,E,M,N,O,P,Q,R,S,U,W (1x)
Keywords
:
Signal Recognition Particle, Rna Binding, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Halic, T. Becker, M. R. Pool, C. M. Spahn, R. A. Grassucci, J. Frank, R. Beckmann
Structure Of The Signal Recognition Particle Interacting With The Elongation-Arrested Ribosome
Nature V. 427 808 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CCC
1
Mod. Nucleotide
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_028058 (S68I, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028058
S
68
I
SRP14_HUMAN
Polymorphism
1802600
D
S
68
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SRP54 (U:266-279)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_THEAQ
266-279
1
U:266-279
[
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (D:2-8)
Exon 1.2 (D:9-33)
Exon 1.3 (D:33-70 (gaps))
Exon 1.4 (D:71-81)
Exon 1.5 (D:82-95)
Exon 2.1a (C:5-24)
Exon 2.2 (C:25-47)
Exon 2.5b (C:48-75)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/-
07: Boundary -/2.1a
08: Boundary 2.1a/2.2
09: Boundary 2.2/2.5b
10: Boundary 2.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000267884
1
ENSE00001099640
chr15:
40331389-40331294
96
SRP14_HUMAN
1-8
8
1
D:2-8
7
1.2
ENST00000267884
2
ENSE00000942420
chr15:
40331149-40331077
73
SRP14_HUMAN
9-33
25
1
D:9-33
25
1.3
ENST00000267884
3
ENSE00000942421
chr15:
40330595-40330483
113
SRP14_HUMAN
33-70
38
1
D:33-70 (gaps)
38
1.4
ENST00000267884
4
ENSE00000942422
chr15:
40329219-40329187
33
SRP14_HUMAN
71-81
11
1
D:71-81
11
1.5
ENST00000267884
5
ENSE00001099638
chr15:
40328701-40327891
811
SRP14_HUMAN
82-136
55
1
D:82-95
14
2.1a
ENST00000304786
1a
ENSE00001442734
chr1:
225965531-225965714
184
SRP09_HUMAN
1-24
24
1
C:5-24
20
2.2
ENST00000304786
2
ENSE00000961765
chr1:
225971002-225971070
69
SRP09_HUMAN
25-47
23
1
C:25-47
23
2.5b
ENST00000304786
5b
ENSE00001838300
chr1:
225976942-225978168
1227
SRP09_HUMAN
48-86
39
1
C:48-75
28
[
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1ry1b_ (B:)
1b: SCOP_d1ry1c_ (C:)
1c: SCOP_d1ry1d_ (D:)
1d: SCOP_d1ry1s_ (S:)
1e: SCOP_d1ry1u_ (U:)
1f: SCOP_d1ry1w_ (W:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Low resolution protein structures
(283)
Fold
:
Signal recognition particle (SRP) complex
(1)
Superfamily
:
Signal recognition particle (SRP) complex
(1)
Family
:
Signal recognition particle (SRP) complex
(1)
Protein domain
:
Signal recognition particle (SRP) complex
(1)
interspecies complex
(1)
1a
d1ry1b_
B:
1b
d1ry1c_
C:
1c
d1ry1d_
D:
1d
d1ry1s_
S:
1e
d1ry1u_
U:
1f
d1ry1w_
W:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(7, 7)
Info
all PFAM domains
1a: PFAM_7tm_1_1ry1S01 (S:54-67)
2a: PFAM_SRP54_1ry1U01 (U:98-293)
3a: PFAM_SRP14_1ry1D01 (D:4-94)
4a: PFAM_SRP19_1ry1B01 (B:16-116)
5a: PFAM_SRP54_N_1ry1U02 (U:5-82)
6a: PFAM_SRP9_21_1ry1C01 (C:5-74)
7a: PFAM_SRP_SPB_1ry1W01 (W:326-431)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
GPCR_A
(90)
Family
:
7tm_1
(47)
Tursiops truncatus (Atlantic bottle-nosed dolphin) (Delphinus truncatus)
(1)
1a
7tm_1-1ry1S01
S:54-67
Clan
:
P-loop_NTPase
(1112)
Family
:
SRP54
(20)
Thermus aquaticus
(12)
2a
SRP54-1ry1U01
U:98-293
Clan
:
no clan defined [family: SRP14]
(1)
Family
:
SRP14
(1)
Homo sapiens (Human)
(1)
3a
SRP14-1ry1D01
D:4-94
Clan
:
no clan defined [family: SRP19]
(9)
Family
:
SRP19
(9)
Homo sapiens (Human)
(3)
4a
SRP19-1ry1B01
B:16-116
Clan
:
no clan defined [family: SRP54_N]
(20)
Family
:
SRP54_N
(20)
Thermus aquaticus
(12)
5a
SRP54_N-1ry1U02
U:5-82
Clan
:
no clan defined [family: SRP9-21]
(1)
Family
:
SRP9-21
(1)
Homo sapiens (Human)
(1)
6a
SRP9-21-1ry1C01
C:5-74
Clan
:
no clan defined [family: SRP_SPB]
(20)
Family
:
SRP_SPB
(20)
Mus musculus (Mouse)
(1)
7a
SRP_SPB-1ry1W01
W:326-431
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Asym.Unit (236 KB)
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