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1RWI
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
EXTRACELLULAR DOMAIN OF MYCOBACTERIUM TUBERCULOSIS PKND
Authors
:
M. C. Good, A. E. Greenstein, T. A. Young, H. L. Ng, T. Alber, Tb Structural Genomics Consortium (Tbsgc)
Date
:
16 Dec 03 (Deposition) - 27 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Keywords
:
Beta Propeller, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Good, A. E. Greenstein, T. A. Young, H. L. Ng, T. Alber
Sensor Domain Of The Mycobacterium Tuberculosis Receptor Ser/Thr Protein Kinase, Pknd, Forms A Highly Symmetric Beta Propeller.
J. Mol. Biol. V. 339 459 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
View:
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No.
Name
Count
Type
Full Name
1
CD
14
Ligand/Ion
CADMIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:264 , HIS A:267 , ASP B:151 , HOH B:1304 , HOH B:1322
BINDING SITE FOR RESIDUE CD A 1001
02
AC2
SOFTWARE
HIS A:265 , HIS A:266 , HOH A:1267
BINDING SITE FOR RESIDUE CD A 1002
03
AC3
SOFTWARE
HIS A:268 , HIS A:269 , HIS A:270 , GLU B:42 , HOH B:1306 , HOH B:1365
BINDING SITE FOR RESIDUE CD A 1003
04
AC4
SOFTWARE
ASP A:244 , HOH A:1229 , ASP B:169
BINDING SITE FOR RESIDUE CD B 1004
05
AC5
SOFTWARE
ASP A:169 , ASP B:244 , HIS B:269 , HOH B:1354 , HOH B:1370
BINDING SITE FOR RESIDUE CD B 1101
06
AC6
SOFTWARE
ASP A:151 , GLU B:264 , HIS B:267 , HOH B:1312 , HOH B:1320
BINDING SITE FOR RESIDUE CD B 1102
07
AC7
SOFTWARE
HIS B:265 , HIS B:266
BINDING SITE FOR RESIDUE CD B 1103
08
AC8
SOFTWARE
GLU A:42 , HIS B:268 , HIS B:270 , HOH B:1314 , HOH B:1351
BINDING SITE FOR RESIDUE CD B 1104
09
AC9
SOFTWARE
HIS A:270 , GLU B:111 , ASP B:153
BINDING SITE FOR RESIDUE CD B 1201
10
BC1
SOFTWARE
HIS A:269 , HIS B:210
BINDING SITE FOR RESIDUE CD A 1202
11
BC2
SOFTWARE
ASN B:150 , ASP B:151 , ASP B:169 , HOH B:1356
BINDING SITE FOR RESIDUE CD B 1203
12
BC3
SOFTWARE
GLU A:111 , ASP A:153
BINDING SITE FOR RESIDUE CD B 1301
13
BC4
SOFTWARE
HIS B:269
BINDING SITE FOR RESIDUE CD B 1302
14
BC5
SOFTWARE
ASN A:150 , ASP A:151 , ASP A:169
BINDING SITE FOR RESIDUE CD B 1303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: NHL (A:12-52,B:12-52|A:96-137,B:96-137|...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NHL
PS51125
NHL repeat profile.
PKND_MYCTO
414-456
498-539
461-497
540-581
624-664
582-623
12
A:12-52
B:12-52
A:96-137
B:96-137
A:59-95
B:59-95
A:138-179
B:138-179
A:222-262
B:222-262
A:180-221
B:180-221
PKND_MYCTU
414-456
498-539
461-497
540-581
624-664
582-623
12
A:12-52
B:12-52
A:96-137
B:96-137
A:59-95
B:59-95
A:138-179
B:138-179
A:222-262
B:222-262
A:180-221
B:180-221
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1rwia_ (A:)
1b: SCOP_d1rwib_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
NHL repeat
(3)
Family
:
NHL repeat
(3)
Protein domain
:
Serine/threonine-protein kinase PknD
(2)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
1a
d1rwia_
A:
1b
d1rwib_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1rwiA00 (A:11-270)
1b: CATH_1rwiB00 (B:12-270)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(2)
1a
1rwiA00
A:11-270
1b
1rwiB00
B:12-270
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
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